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wgs_{sv,cnv}_export_external are also affected by changes in the wrapper for varfish_annotator #355

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Nicolai-vKuegelgen opened this issue Jan 18, 2023 · 0 comments · Fixed by #356
Closed

wgs_{sv,cnv}_export_external are also affected by changes in the wrapper for varfish_annotator #355

Nicolai-vKuegelgen opened this issue Jan 18, 2023 · 0 comments · Fixed by #356

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@Nicolai-vKuegelgen
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Describe the bug
Recent changes in the wrapper script for varfish_annotator break the steps that annotate externally produced files.

To Reproduce
Steps to reproduce the behavior:

  1. Run wgs_{sv,cnv}_export_external

Expected behavior
Adapt output and log rules to adhere with current standard.
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@Nicolai-vKuegelgen