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feat: upgrade to GATK v4.3.0 for gCNV variant calling (#218) #265

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merged 9 commits into from
Dec 23, 2022
Merged

feat: upgrade to GATK v4.3.0 for gCNV variant calling (#218) #265

merged 9 commits into from
Dec 23, 2022

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@holtgrewe holtgrewe linked an issue Dec 16, 2022 that may be closed by this pull request
Uprade GATK to v4.3.0 for gCNV variant calling. #218
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  • Please format your Python code with black: make black
  • Please format your Snakemake code with snakefmt: make snakefmt
  • Please organize your imports isorts: make isort
  • Please ensure that your code passes flake8: make flake8

You can trigger all lints locally by running make lint

@holtgrewe holtgrewe force-pushed the 218-adjust-gcnv-case-mode-to-perform-calls-per-family branch 2 times, most recently from 09e40de to ab1fdfd Compare December 21, 2022 13:10
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coveralls commented Dec 21, 2022 •
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Coverage Status

Coverage: 88.877% (+0.01%) from 88.865% when pulling d9d33bb on 218-adjust-gcnv-case-mode-to-perform-calls-per-family into a3303ac on main.

@holtgrewe holtgrewe force-pushed the 218-adjust-gcnv-case-mode-to-perform-calls-per-family branch 2 times, most recently from 2e8954e to 5947bec Compare December 22, 2022 15:56
@holtgrewe holtgrewe force-pushed the 218-adjust-gcnv-case-mode-to-perform-calls-per-family branch from 5947bec to 02479ea Compare December 22, 2022 16:19
@holtgrewe holtgrewe changed the title Upgrade to GATK 4.3.0 for gcnv calling (#218) feat: upgrade to GATK v4.3.0 for gCNV variant calling (#218) Dec 23, 2022
@holtgrewe holtgrewe marked this pull request as ready for review December 23, 2022 09:20
@holtgrewe holtgrewe merged commit 372464e into main Dec 23, 2022
@holtgrewe holtgrewe deleted the 218-adjust-gcnv-case-mode-to-perform-calls-per-family branch December 23, 2022 09:22
@tedil tedil mentioned this pull request Jun 28, 2024
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Uprade GATK to v4.3.0 for gCNV variant calling.
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