From ae00febc0b11c4e91a10c66743bc000616665330 Mon Sep 17 00:00:00 2001 From: Manuel Holtgrewe Date: Wed, 22 Feb 2023 13:33:43 +0100 Subject: [PATCH] fix: fixing problem in running varfish-export The code previously erroneously required consistent library kits. --- snappy_pipeline/workflows/varfish_export/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/snappy_pipeline/workflows/varfish_export/__init__.py b/snappy_pipeline/workflows/varfish_export/__init__.py index efe66cacd..279fddfde 100644 --- a/snappy_pipeline/workflows/varfish_export/__init__.py +++ b/snappy_pipeline/workflows/varfish_export/__init__.py @@ -224,7 +224,7 @@ def _get_index_ngs_libraries( """ for sheet in filter(is_not_background, self.parent.shortcut_sheets): for pedigree in sheet.cohort.pedigrees: - if not require_consistent_pedigree_kits or self._is_pedigree_good(pedigree): + if self._is_pedigree_good(pedigree): index = pedigree.index.dna_ngs_library.name donors = [ donor.dna_ngs_library.name