diff --git a/tests/snappy_pipeline/workflows/test_workflows_sv_calling_targeted.py b/tests/snappy_pipeline/workflows/test_workflows_sv_calling_targeted.py index c90149d0d..0a95e5681 100644 --- a/tests/snappy_pipeline/workflows/test_workflows_sv_calling_targeted.py +++ b/tests/snappy_pipeline/workflows/test_workflows_sv_calling_targeted.py @@ -633,7 +633,13 @@ def test_gcnv_contig_ploidy_step_part_get_input_files(sv_calling_targeted_workfl "work/bwa.gcnv_coverage.P00{i}-N1-DNA1-WGS1/out/bwa.gcnv_coverage.P00{i}-N1-DNA1-WGS1.tsv" ) tsv_list_out = [tsv_pattern.format(i=i) for i in range(1, 7)] # P001 - P006 - expected = {"tsv": tsv_list_out} + expected = { + "tsv": tsv_list_out, + "ped": [ + "work/write_pedigree.P001-N1-DNA1-WGS1/out/P001-N1-DNA1-WGS1.ped", + "work/write_pedigree.P004-N1-DNA1-WGS1/out/P004-N1-DNA1-WGS1.ped", + ], + } # Get actual wildcards = Wildcards( fromdict={"mapper": "bwa", "library_kit": "Agilent_SureSelect_Human_All_Exon_V6"}