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Dependencies issue when installing with conda and the tool not working in general #50

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axol0tl opened this issue Aug 21, 2024 · 0 comments

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@axol0tl
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axol0tl commented Aug 21, 2024

Hi, so after I saw that the web server does not work I decided to run the tool on my machine. Which is a Mac so I could not use the existing docker image and I did not manage to build it.
So I decided to install with conda. Since there were updates of flask and werkzeug packages, when creating the environment for scelvis I had to specify:
conda create -n scelvis python=3 werkzeug=2.0.0 flask=2
and then install with
conda install bioconda::scelvis

I then downloaded the hgmm_1k.h5ad file to test the app. However, when I open the page of it in my browser and select the dataset -> the app briefly tries to load the data and then goes back to the main page (with info and tutorial links)

if it helps, this is the terminal output:
[I 240821 17:37:18 data:257] Loading anndata for hgmm_1k from file:///Users/<path_to>/hgmm_1k.h5ad INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "GET /dash/_dash-component-suites/dash/dcc/async-slider.js HTTP/1.1" 304 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "GET /dash/_dash-component-suites/dash/dcc/async-dropdown.js HTTP/1.1" 304 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:18] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:22] "GET /dash/_dash-component-suites/dash/dcc/async-graph.js HTTP/1.1" 304 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:22] "GET /dash/_dash-component-suites/dash/dcc/async-plotlyjs.js HTTP/1.1" 304 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:22] "POST /dash/_dash-update-component HTTP/1.1" 200 - INFO:werkzeug:127.0.0.1 - - [21/Aug/2024 17:37:22] "POST /dash/_dash-update-component HTTP/1.1" 200 -

I dont know what is the source of the issue. Do you have any ideas?

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