From 9be207e77e4de33381d3e645d68ba3c0505262c5 Mon Sep 17 00:00:00 2001
From: Manuel Holtgrewe <manuel.holtgrewe@bih-charite.de>
Date: Mon, 5 Feb 2024 17:12:38 +0100
Subject: [PATCH] feat: more types in stores and slot in GenePathogenicityCard
 (#89)

---
 .../GenePathogenicityCard/GenePathogenicityCard.vue  |  3 +++
 src/stores/geneInfo/store.ts                         | 12 +++++++-----
 vitest.config.mts                                    |  8 +++++++-
 3 files changed, 17 insertions(+), 6 deletions(-)

diff --git a/src/components/GenePathogenicityCard/GenePathogenicityCard.vue b/src/components/GenePathogenicityCard/GenePathogenicityCard.vue
index 512be69..d5f14ca 100644
--- a/src/components/GenePathogenicityCard/GenePathogenicityCard.vue
+++ b/src/components/GenePathogenicityCard/GenePathogenicityCard.vue
@@ -231,6 +231,9 @@ const props = withDefaults(
               <template v-else> No gnomAD constraints </template>
             </v-sheet>
           </v-col>
+          <v-col cols="3">
+            <slot></slot>
+          </v-col>
         </v-row>
       </template>
     </v-card-text>
diff --git a/src/stores/geneInfo/store.ts b/src/stores/geneInfo/store.ts
index cc85d73..4136c1d 100644
--- a/src/stores/geneInfo/store.ts
+++ b/src/stores/geneInfo/store.ts
@@ -7,10 +7,12 @@ import { defineStore } from 'pinia'
 import { ref } from 'vue'
 
 import { AnnonarsClient } from '../../api/annonars'
-import { DottyClient } from '../../api/dotty'
+import { DottyClient, TranscriptResult } from '../../api/dotty'
 import { type HpoTerm, VigunoClient } from '../../api/viguno'
 import { type GenomeBuild } from '../../lib/genomeBuilds'
 import { urlConfig } from '../../lib/urlConfig'
+import { ClinvarPerGeneRecord } from '../../pbs/annonars/clinvar/per_gene'
+import { Record as GeneInfoRecord } from '../../pbs/annonars/genes/base'
 import { StoreState } from '../types'
 
 export const useGeneInfoStore = defineStore('geneInfo', () => {
@@ -21,16 +23,16 @@ export const useGeneInfoStore = defineStore('geneInfo', () => {
   const hgncId = ref<string | undefined>(undefined)
 
   /** The retrieved gene data from annonars. */
-  const geneInfo = ref<any | undefined>(undefined)
+  const geneInfo = ref<GeneInfoRecord | undefined>(undefined)
 
   /** The HPO terms retrieved from viguno. */
   const hpoTerms = ref<HpoTerm[]>([])
 
   /** ClinVar gene-related information from annoars. */
-  const geneClinvar = ref<any | undefined>(undefined)
+  const geneClinvar = ref<ClinvarPerGeneRecord | undefined>(undefined)
 
   /** Transcript information from dotty (unless dotty API not available). */
-  const transcripts = ref<any | undefined>(undefined)
+  const transcripts = ref<TranscriptResult | undefined>(undefined)
 
   function clearData() {
     storeState.value = StoreState.Initial
@@ -88,7 +90,7 @@ export const useGeneInfoStore = defineStore('geneInfo', () => {
           hgncIdQuery,
           genomeBuild === 'grch37' ? 'GRCh37' : 'GRCh38'
         )
-        transcripts.value = transcriptsData
+        transcripts.value = transcriptsData ?? undefined
       }
     } catch (e) {
       console.error('There was an error loading the gene data.', e)
diff --git a/vitest.config.mts b/vitest.config.mts
index 66bc91f..546c7cc 100644
--- a/vitest.config.mts
+++ b/vitest.config.mts
@@ -19,10 +19,16 @@ export default mergeConfig(
         provider: 'istanbul',
         reporter: ['text', 'html', 'clover', 'json'],
         include: [
+          'src/router/**/*.ts',
+          'src/router/*.ts',
           'src/lib/**/*.ts',
+          'src/lib/*/*.ts',
           'src/stores/**/*.ts',
+          'src/stores/*/*.ts',
           'src/components/**/*.{vue,ts}',
-          'src/views/**/*.{vue,ts}'
+          'src/components/*/*.ts',
+          'src/views/**/*.{vue,ts}',
+          'src/views/*/*.ts'
         ],
         exclude: ['**/*.spec.ts', '**/*.stories.ts']
       },