Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feat: gnomAD v4 frequency import (#275) #368

Merged
merged 15 commits into from
Dec 28, 2023

Conversation

holtgrewe
Copy link
Contributor

No description provided.

@holtgrewe holtgrewe linked an issue Dec 27, 2023 that may be closed by this pull request
@holtgrewe holtgrewe marked this pull request as draft December 27, 2023 15:00
Copy link

codecov bot commented Dec 27, 2023

Codecov Report

Attention: 40 lines in your changes are missing coverage. Please review.

Comparison is base (61411b0) 73.39% compared to head (bfeefee) 74.13%.
Report is 2 commits behind head on main.

❗ Current head bfeefee differs from pull request most recent head e2a4ce6. Consider uploading reports for the commit e2a4ce6 to get more accurate results

Files Patch % Lines
src/server/actix_server/annos_variant.rs 0.00% 14 Missing ⚠️
src/pbs/gnomad/vep_gnomad4.rs 83.82% 11 Missing ⚠️
src/gnomad_nuclear/cli/query.rs 96.15% 4 Missing ⚠️
src/gnomad_nuclear/cli/import.rs 92.85% 3 Missing ⚠️
src/pbs/gnomad/gnomad4.rs 97.95% 3 Missing ⚠️
src/freqs/serialized/xy.rs 0.00% 2 Missing ⚠️
src/pbs/gnomad/gnomad3.rs 89.47% 2 Missing ⚠️
src/common/noodles.rs 75.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #368      +/-   ##
==========================================
+ Coverage   73.39%   74.13%   +0.74%     
==========================================
  Files          77       79       +2     
  Lines        7776     8111     +335     
==========================================
+ Hits         5707     6013     +306     
- Misses       2069     2098      +29     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@holtgrewe holtgrewe marked this pull request as ready for review December 28, 2023 15:20
@holtgrewe holtgrewe enabled auto-merge (squash) December 28, 2023 15:20
@holtgrewe holtgrewe merged commit 2a7e098 into main Dec 28, 2023
7 checks passed
@holtgrewe holtgrewe deleted the 275-implement-gnomad-v4-frequency-support branch December 28, 2023 15:24
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Implement gnomAD v4 frequency support
1 participant