From 70b8af3b1a00fefa3ff719d668a2e71b543bf196 Mon Sep 17 00:00:00 2001 From: mnoergaard Date: Thu, 20 May 2021 11:57:09 +0200 Subject: [PATCH 1/3] Update scandate description with correct regexp --- .../09-positron-emission-tomography.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/04-modality-specific-files/09-positron-emission-tomography.md b/src/04-modality-specific-files/09-positron-emission-tomography.md index 9530103a79..217d847748 100644 --- a/src/04-modality-specific-files/09-positron-emission-tomography.md +++ b/src/04-modality-specific-files/09-positron-emission-tomography.md @@ -189,7 +189,7 @@ which we divide into several categories: | InjectionStart | REQUIRED | [number][] | Time of start of injection with respect to `TimeZero` in the default unit seconds. This corresponds to DICOM Tag 0018, 1042 `Contrast/Bolus Start Time` converted to seconds relative to `TimeZero`. | | FrameTimesStart | REQUIRED | [array][] of [numbers][] | Start times for all frames relative to `TimeZero` in default unit seconds. | | FrameDuration | REQUIRED | [array][] of [numbers][] | Time duration of each frame in default unit seconds. This corresponds to DICOM Tag 0018, 1242 `Actual Frame Duration` converted to seconds. | -| ScanDate | RECOMMENDED | [string][] | Date of scan in the default unit `"YYYY-MM-DD[Z]"`, with the Z indicator being optional for indicating UTC timezone (see [Units](../02-common-principles.md#units)). | +| ScanDate | RECOMMENDED | [string][] | Date (and optionally time) of scan formatted as YYYY-MM-DD[Thh:mm:ss[.000000]][Z] (see also [Units](../02-common-principles.md#units)). | InjectionEnd | RECOMMENDED | [number][] | Time of end of injection with respect to `TimeZero` in the default unit seconds. | We refer to the common principles for the standards for describing dates and timestamps, including possibilities for anonymization (see the [units section](../02-common-principles.md#units)). From 0ef13a8b1c0c8cbeb358a56ce4aae18b23550b32 Mon Sep 17 00:00:00 2001 From: mnoergaard Date: Mon, 31 May 2021 09:40:23 +0200 Subject: [PATCH 2/3] Update 09-positron-emission-tomography.md --- .../09-positron-emission-tomography.md | 1 - 1 file changed, 1 deletion(-) diff --git a/src/04-modality-specific-files/09-positron-emission-tomography.md b/src/04-modality-specific-files/09-positron-emission-tomography.md index 217d847748..7b6c5f9cb7 100644 --- a/src/04-modality-specific-files/09-positron-emission-tomography.md +++ b/src/04-modality-specific-files/09-positron-emission-tomography.md @@ -189,7 +189,6 @@ which we divide into several categories: | InjectionStart | REQUIRED | [number][] | Time of start of injection with respect to `TimeZero` in the default unit seconds. This corresponds to DICOM Tag 0018, 1042 `Contrast/Bolus Start Time` converted to seconds relative to `TimeZero`. | | FrameTimesStart | REQUIRED | [array][] of [numbers][] | Start times for all frames relative to `TimeZero` in default unit seconds. | | FrameDuration | REQUIRED | [array][] of [numbers][] | Time duration of each frame in default unit seconds. This corresponds to DICOM Tag 0018, 1242 `Actual Frame Duration` converted to seconds. | -| ScanDate | RECOMMENDED | [string][] | Date (and optionally time) of scan formatted as YYYY-MM-DD[Thh:mm:ss[.000000]][Z] (see also [Units](../02-common-principles.md#units)). | InjectionEnd | RECOMMENDED | [number][] | Time of end of injection with respect to `TimeZero` in the default unit seconds. | We refer to the common principles for the standards for describing dates and timestamps, including possibilities for anonymization (see the [units section](../02-common-principles.md#units)). From edf0237c7edeb6fd5975d11a6b472c3748a04b98 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Wed, 2 Jun 2021 09:25:44 -0400 Subject: [PATCH 3/3] Re-add ScanDate as DEPRECATED --- .../09-positron-emission-tomography.md | 18 ++++++++++-------- 1 file changed, 10 insertions(+), 8 deletions(-) diff --git a/src/04-modality-specific-files/09-positron-emission-tomography.md b/src/04-modality-specific-files/09-positron-emission-tomography.md index 7b6c5f9cb7..c6040e11f1 100644 --- a/src/04-modality-specific-files/09-positron-emission-tomography.md +++ b/src/04-modality-specific-files/09-positron-emission-tomography.md @@ -182,14 +182,15 @@ which we divide into several categories: #### Time -| **Key name** | **Requirement level** | **Data type** | **Description** | -| --------------- | --------------------- | ------------------------ | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | -| TimeZero | REQUIRED | [string][] | Time zero to which all scan and/or blood measurements have been adjusted to, in the unit "hh:mm:ss". This should be equal to `InjectionStart` or `ScanStart`. | -| ScanStart | REQUIRED | [number][] | Time of start of scan with respect to `TimeZero` in the default unit seconds. | -| InjectionStart | REQUIRED | [number][] | Time of start of injection with respect to `TimeZero` in the default unit seconds. This corresponds to DICOM Tag 0018, 1042 `Contrast/Bolus Start Time` converted to seconds relative to `TimeZero`. | -| FrameTimesStart | REQUIRED | [array][] of [numbers][] | Start times for all frames relative to `TimeZero` in default unit seconds. | -| FrameDuration | REQUIRED | [array][] of [numbers][] | Time duration of each frame in default unit seconds. This corresponds to DICOM Tag 0018, 1242 `Actual Frame Duration` converted to seconds. | -| InjectionEnd | RECOMMENDED | [number][] | Time of end of injection with respect to `TimeZero` in the default unit seconds. | +| **Key name** | **Requirement level** | **Data type** | **Description** | +| --------------- | ------------------------ | ------------------------ | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | +| TimeZero | REQUIRED | [string][] | Time zero to which all scan and/or blood measurements have been adjusted to, in the unit "hh:mm:ss". This should be equal to `InjectionStart` or `ScanStart`. | +| ScanStart | REQUIRED | [number][] | Time of start of scan with respect to `TimeZero` in the default unit seconds. | +| InjectionStart | REQUIRED | [number][] | Time of start of injection with respect to `TimeZero` in the default unit seconds. This corresponds to DICOM Tag 0018, 1042 `Contrast/Bolus Start Time` converted to seconds relative to `TimeZero`. | +| FrameTimesStart | REQUIRED | [array][] of [numbers][] | Start times for all frames relative to `TimeZero` in default unit seconds. | +| FrameDuration | REQUIRED | [array][] of [numbers][] | Time duration of each frame in default unit seconds. This corresponds to DICOM Tag 0018, 1242 `Actual Frame Duration` converted to seconds. | +| InjectionEnd | RECOMMENDED | [number][] | Time of end of injection with respect to `TimeZero` in the default unit seconds. | +| ScanDate | [DEPRECATED][deprecated] | [string][] | Date of scan in the format `"YYYY-MM-DD[Z]"`. This field is DEPRECATED, and this metadata SHOULD be recorded in the `acq_time` column of the corresponding [Scans file](../03-modality-agnostic-files.md#scans-file). | We refer to the common principles for the standards for describing dates and timestamps, including possibilities for anonymization (see the [units section](../02-common-principles.md#units)). @@ -411,3 +412,4 @@ time plasma_radioactivity whole_blood_radioactivity metabolite_parent_fraction m [numbers]: https://www.w3schools.com/js/js_json_datatypes.asp [boolean]: https://www.w3schools.com/js/js_json_datatypes.asp [array]: https://www.w3schools.com/js/js_json_arrays.asp +[deprecated]: ../02-common-principles.md#definitions