From f2c273bafafa2af2267663c054d96f43be44e681 Mon Sep 17 00:00:00 2001 From: Francois Date: Sat, 5 Dec 2020 12:09:59 +0100 Subject: [PATCH 1/5] Fixed space- and CoordinateSystem --- ...-ecog01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json} | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) rename ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/{sub-ecog01_ses-postimp_space-MNI152Lin_coordsystem.json => sub-ecog01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json} (91%) diff --git a/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152Lin_coordsystem.json b/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json similarity index 91% rename from ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152Lin_coordsystem.json rename to ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json index f3e07b6c2..232f837eb 100644 --- a/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152Lin_coordsystem.json +++ b/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json @@ -1,8 +1,8 @@ { - "iEEGCoordinateSystem": "MNI152Lin", + "iEEGCoordinateSystem": "Other", "iEEGCoordinateUnits": "mm", "iEEGCoordinateSystemDescription": "SEEG contact coordinates in MNI152 normalized space", "iEEGCoordinateProcessingDescription": "SEEG contacts manually placed with Brainstorm on the post-implanation T1 MRI, which was normalized with SPM12 function spm_maff8", "iEEGCoordinateProcessingReference": "Hermes et al., 2010 JNeuroMeth", "IntendedFor": "sub-ecog01/ses-postimp/anat/sub-ecog01_ses-postimp_T1w.nii.gz" -} \ No newline at end of file +} From 26f57919fe6ae11eb7f133bd5b17e08d4b176da6 Mon Sep 17 00:00:00 2001 From: Francois Date: Sat, 5 Dec 2020 12:17:49 +0100 Subject: [PATCH 2/5] Fixed -space: MNI152Lin => MNI152NLin6Sym (spm8 registration) --- ...=> sub-ecog01_ses-postimp_space-MNI152NLin6Sym_electrodes.tsv} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/{sub-ecog01_ses-postimp_space-MNI152Lin_electrodes.tsv => sub-ecog01_ses-postimp_space-MNI152NLin6Sym_electrodes.tsv} (100%) diff --git a/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152Lin_electrodes.tsv b/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152NLin6Sym_electrodes.tsv similarity index 100% rename from ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152Lin_electrodes.tsv rename to ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-MNI152NLin6Sym_electrodes.tsv From 02bb826df3c5f30c61013d9f3fcb84ac9c6850f3 Mon Sep 17 00:00:00 2001 From: Francois Date: Sat, 5 Dec 2020 12:19:34 +0100 Subject: [PATCH 3/5] Fixed space- and CoordinateSystem --- ...=> sub-01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename ieeg_epilepsy/sub-01/ses-postimp/ieeg/{sub-01_ses-postimp_space-MNI152_coordsystem.json => sub-01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json} (94%) diff --git a/ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152_coordsystem.json b/ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json similarity index 94% rename from ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152_coordsystem.json rename to ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json index a1cbb781d..e9eb7d4ce 100644 --- a/ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152_coordsystem.json +++ b/ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152NLin6Sym_coordsystem.json @@ -1,5 +1,5 @@ { - "iEEGCoordinateSystem": "MNI152", + "iEEGCoordinateSystem": "Other", "iEEGCoordinateUnits": "mm", "iEEGCoordinateSystemDescription": "MNI152 affine normalization with SPM12 function spm_maff8", "iEEGCoordinateProcessingDescription": "Deman, P., Bhattacharjee, M., Tadel, F., Job, A. S., Rivière, D., Cointepas, Y., Kahane, P., … David, O. (2018). IntrAnat Electrodes: A Free Database and Visualization Software for Intracranial Electroencephalographic Data Processed for Case and Group Studies. Frontiers in neuroinformatics, 12, 40. doi:10.3389/fninf.2018.00040", From bcf9761b11c4abce6983b7ef12351593ba82e492 Mon Sep 17 00:00:00 2001 From: Francois Date: Sat, 5 Dec 2020 12:19:55 +0100 Subject: [PATCH 4/5] Rename sub-01_ses-postimp_space-MNI152_electrodes.tsv to sub-01_ses-postimp_space-MNI152NLin6Sym_electrodes.tsv --- ...tsv => sub-01_ses-postimp_space-MNI152NLin6Sym_electrodes.tsv} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename ieeg_epilepsy/sub-01/ses-postimp/ieeg/{sub-01_ses-postimp_space-MNI152_electrodes.tsv => sub-01_ses-postimp_space-MNI152NLin6Sym_electrodes.tsv} (100%) diff --git a/ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152_electrodes.tsv b/ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152NLin6Sym_electrodes.tsv similarity index 100% rename from ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152_electrodes.tsv rename to ieeg_epilepsy/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-MNI152NLin6Sym_electrodes.tsv From 7830cca1439735f8ca9d80177b89a5c20f5a0ab8 Mon Sep 17 00:00:00 2001 From: Francois Date: Sat, 5 Dec 2020 12:30:09 +0100 Subject: [PATCH 5/5] other=>Other --- .../ieeg/sub-ecog01_ses-postimp_space-other_coordsystem.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-other_coordsystem.json b/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-other_coordsystem.json index 30eb3c4f0..8556ce18a 100644 --- a/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-other_coordsystem.json +++ b/ieeg_epilepsy_ecog/sub-ecog01/ses-postimp/ieeg/sub-ecog01_ses-postimp_space-other_coordsystem.json @@ -1,8 +1,8 @@ { - "iEEGCoordinateSystem": "other", + "iEEGCoordinateSystem": "Other", "iEEGCoordinateUnits": "mm", "iEEGCoordinateSystemDescription": "Subject head coordinates, as defined by the sform transformation in the associated nii file", "iEEGCoordinateProcessingDescription": "SEEG contacts manually placed with Brainstorm on the post-implanation T1 MRI", "iEEGCoordinateProcessingReference": "https://neuroimage.usc.edu/brainstorm/Tutorials/ECoG", "IntendedFor": "sub-ecog01/ses-postimp/anat/sub-ecog01_ses-postimp_T1w.nii.gz" -} \ No newline at end of file +}