makefile

tests/data/MoAEpilot:
	mkdir -p tests/data
	curl -fL -o moae.zip https://www.fil.ion.ucl.ac.uk/spm/download/data/MoAEpilot/MoAEpilot.bids.zip
	unzip -q moae.zip -d tests/data
	rm -f moae.zip

build:
	docker build . --tag cat12

version:
	docker run --rm -it cat12 . . participant --version

view:
	docker run --rm -it cat12 . . participant view segment_enigma --verbose 3

copy:
	docker run --rm -it cat12 . /foo participant copy segment --verbose 3

segment: tests/data/MoAEpilot
	docker run --rm -it -v $${PWD}/tests/data/MoAEpilot:/data cat12 /data /data/derivatives participant segment --verbose 3 --type default

enigma: tests/data/MoAEpilot
	docker run --rm -it -v $${PWD}/tests/data/MoAEpilot:/data cat12 /data /data/derivatives participant segment --verbose 3 --type enigma

simple: tests/data/MoAEpilot
	docker run --rm -it -v $${PWD}/tests/data/MoAEpilot:/data cat12 /data /data/derivatives participant segment --verbose 3 --type simple

data_ds002799:
	mkdir -p tests/data
	cd tests/data && datalad install ///openneuro/ds002799
	cd tests/data/ds002799 && datalad get sub-2*/*/*/*T1w* -J 12

ds002799: data_ds002799
	mkdir -p tests/data/outputs
	docker run --rm -it \
		-v $${PWD}/tests/data:/data \
		cat12 /data/ds002799 /data/outputs/ds002799 participant \
			segment \
			--type long_2 \
			--participant_label 292 294