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prep_test_stable.sh
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prep_test_stable.sh
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#!/bin/bash
# edit to custom API key if you run out of credits
apiKey="a-demo-key-with-low-quota-per-ip-address"
dataURL="https://bhofmei.github.io/bhofmei-jbplugins/?data=data"
test_1='%26loc=Chr5%3A8219..13732%26tracks=%26highlight=%26screenshot=p20o1r1n1u1b1m111111s000000z1'
echo ""
echo "Taking screenshot for installation, no tracks..."
echo ""
wget -nv -O 'file1.json' "https://phantomjscloud.com/api/browser/v2/${apiKey}/?request={url:\"${dataURL}${test_1}\",renderType:\"json\",outputAsJson:true,requestSettings:{maxWait:100000}}"
test_2='%26loc=Chr5%3A8160..14012%26tracks=t1_genes%2Ct5_rnaseq-un%26highlight=%26screenshot=p20o0r0n0u1b1m111111s000000z1~0h600y1v0i0q0d0f0~1y1i-1x1q1v0'
echo ""
echo "Taking screenshot for JBrowse tracks, view options..."
echo ""
wget -nv -O 'file2.json' "https://phantomjscloud.com/api/browser/v2/${apiKey}/?request={url:\"${dataURL}${test_2}\",renderType:\"json\",outputAsJson:true}"
test_3='%26loc=Chr5%3A40318..49663%26tracks=t1_genes%2Ct3_mt-snps%2Ct5_rnaseq-un%2Ct6_rnaseq-snp%2Ct8_xy%2Ct18_xy2%26highlight=%26screenshot=p20o0r0n0u0b1m111111s000000z1~0h600y1v1i0q0d0f0~1h40y1i0q0~2h600y1v0i0q0d1f0~3y2i0q1~4y3x50q1v0~5y1q1v1'
echo ""
echo "Taking screenshot for JBrowse tracks and HTML..."
echo ""
wget -nv -O 'file3.json' "https://phantomjscloud.com/api/browser/v2/${apiKey}/?request={url:\"${dataURL}${test_3}\",renderType:\"json\",outputAsJson:true}"
test_4='%26loc=Chr5%3A36717..41535%26tracks=t11_methyl%2Ct15_methyl-ext%2Ct13_motif-dens%2Ct10_smrna%2Ct12_stranded%2Ct17_rnaseq-st%26highlight=%26screenshot=p20o0r0n0u0b1m111011s000000z1~0y1i-1x1q1v0~1h50y1i-1x1q1v0~2h100i0x1q1v0~3h400y1v0i0q0d0f0~4y1q1v0~5h100y1v0i0q0d0f'
echo ""
echo "Taking screenshot for Plugin tracks..."
echo ""
wget -nv -O 'file4.json' "https://phantomjscloud.com/api/browser/v2/${apiKey}/?request={url:\"${dataURL}${test_4}\",renderType:\"json\",outputAsJson:true}"
test_5='%26loc=Chr5%3A35976..40835%26tracks=t11_methyl%2Ct13_motif-dens%2Ct10_smrna%2Ct9_dens%2Ct12_stranded%2Ct17_rnaseq-st%2Ct18_xy2%26highlight=%26screenshot=p10o0r0n0u0b1m011111s000000z1~0y1i-1x1q1v1~1h100i0x1q1v1~2h300y1v1i0q0d0f0~3h31q1v1~4y1q1v1~5h500y1v1i0q0d0f0~6y1q1v1'
echo ""
echo "Taking screenshot for Plugin tracks with HTML/SVG..."
echo ""
wget -nv -O 'file5.json' "https://phantomjscloud.com/api/browser/v2/${apiKey}/?request={url:\"${dataURL}${test_5}\",renderType:\"json\",outputAsJson:true}"