v1.7.0

v1.7.0 (2024-11-19)

Features

• Implement logging and some standards for ruff config (#134, 7c31019)

• feat(logging): add structlog integration with custom processors and example logger

• chore: remove star imports

• feat(lint): update ruff configuration to include new linting rules and extend exclusions

• refactor: update pixi.lock and pixi.toml for ruff command structure and remove unused betapipeline entry

• refactor(logging): standardize string quotes and improve logger configuration handling

• feat(logging): integrate structured logging and enhance debug information in AutoPipeline and StructureSet

• fix: #134 (comment)

• fix: #134 (comment)

• fix: #134 (comment)

• refactor(logging): streamline logging configuration and ensure log directory creation

• chore: add log files to .gitignore to prevent tracking of generated logs

• fix: Update src/imgtools/logging/init.py

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

• fix: #134 (comment)

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

• chore: update .gitignore to include log files in imgtools directory

• feat(datagraph): integrate logging for edge table processing and visualization

• feat(ops): add timing for graph formation and update DataGraph initialization

• chore: rename workflow from Test to CI-CD and restrict push triggers to main branch

• feat(crawl): integrate logging for folder crawling and data saving processes

• fix(structureset): enhance logging for ROI point retrieval errors

• fix(autopipeline): update logger level to use environment variable for flexibility

• fix(logging): streamline error handling for log directory creation

• fix: #134 (comment)

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

• refactor(logging): enhance logging configuration and streamline JSON setup

• chore(pixi.lock): add license_family field for clarity

• refactor(logging): enhance LoggingManager with valid log levels and improve JSON logging setup

• refactor(logging): enhance documentation and improve LoggingManager configuration options

• refactor(logging): validate log level assignment before setting self.level

• feat(logging): add mypy and type-checking support; refactor logging manager and improve error handling

• refactor(logging): remove unused Optional import from typing

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Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

v1.6.0

v1.6.0 (2024-11-15)

Features

• Transfer project management to Pixi (#133, a268211)

• feat: started port to pixi

• feat: updated test suite for pixi and started refactor of cicd

• build: added coverage to gha

• fix: explicitly direct location of package code and update pixi in pipeline

• fix: added linux to pixi

• chore: update GitHub Actions workflow for improved deployment process

• chore: clean up GitHub Actions workflow by removing commented-out jobs and updating dependencies

• chore: update GitHub Actions workflow to deploy from both main and devel branches, and refresh dependencies in pixi.lock

• chore(sem-ver): 1.6.0-rc.1

• fix: update version_toml path in pyproject.toml for semantic release

• chore(sem-ver): 1.6.0-rc.2

• chore: remove requirements.txt file and poetry.lock

• chore: update authors and maintainers in pyproject.toml, and add version in init.py

• chore: remove setup.py file as part of project restructuring

• chore: update pixi.lock and add ruff configuration for linting

• chore: fix some recommendations from coderabbit

---

Co-authored-by: semantic-release

v1.6.0-rc.2

v1.6.0-rc.2 (2024-11-14)

Bug Fixes

• Update version_toml path in pyproject.toml for semantic release (0dacfee)

v1.6.0-rc.1

v1.6.0-rc.1 (2024-11-14)

Bug Fixes

• Added linux to pixi (023a111)

• Explicitly direct location of package code and update pixi in pipeline (6767ced)

Build System

• Added coverage to gha (6382dbf)

Chores

• Update GitHub Actions workflow to deploy from both main and devel branches, and refresh dependencies in pixi.lock (60350d6)

• Clean up GitHub Actions workflow by removing commented-out jobs and updating dependencies (8274e4d)

• Update GitHub Actions workflow for improved deployment process (ddad006)

Features

• Updated test suite for pixi and started refactor of cicd (cc94817)

• Started port to pixi (0ff9b90)

v1.5.8

v1.5.8 (2024-10-25)

Bug Fixes

• fix(datagraph): iteration through edge_types wasnt updated for seg (#131)

• fix(datagraph): update edge_types to 8 and handle new edge type for SEG->CT/MR mapping in final dataframe processing

• fix(pyproject): update attrs version constraint to allow all 23.x versions and above (e7cca2a)

v1.5.7

v1.5.7 (2024-10-23)

Bug Fixes

• fix: ci-cd - add id in release for pypi step (7abd175)

v1.5.6

v1.5.6 (2024-10-23)

Bug Fixes

• fix: update ci to release to pypi (a92a41f)

v1.5.5

v1.5.5 (2024-10-23)

Bug Fixes

• fix: update ci to use semver bot (98e3bd0)

• fix: remove deprecated pydicom.dicomdir.DicomDir variable type option (#130)

• fix: remove deprecated pydicom.dicomdir.DicomDir variable type option

• style: removed Union since dicom_data can only be a FileDataset

• refactor: remove Union import for linting (56ef37e)

Chores

• chore: #126 update docstring for StructureSetToSegmentation (reopen) (#128)

• chore: bump artifact action version

• refactor: update StructureSetToSegmentation docstring and remove unused dev group in pyproject.toml

• chore: fix download action in workflow to use correct artifact version

• chore: correct instantiation reference and update parameter description in StructureSetToSegmentation docstring

• chore: enhance StructureSetToSegmentation docstring to support None as a roi_names option for loading all ROIs (272078c)

Unknown

• removing old Dataset class (#122) (5546cec)

• Seg support (#121)

• fix: License updated to MIT

• Fixing datagraph module to resolve SEG compatibility issues. (4c03f48)

v1.5.4

v1.5.4 (2024-06-12)

Fix

• fix: License updated to MIT (#119) (6e755dd)

v1.5.3

v1.5.3 (2024-06-10)

Fix

• fix: Clarified license in README.md (#118) (a4899ca)