CI-CD

chore: restructure RNA-seq documentation and remove outdated introduc… #448

	name: CI-CD

	# run on any push to any directory and a pull to main or development
	on:
	push:
	pull_request:
	branches:
	- main
	- development

	jobs:
	################################################################################################
	# Docs: Build and deploy mkdocs documentation
	################################################################################################
	Docs:
	runs-on: ubuntu-latest

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}

	permissions:
	# Need to give the action permission to write to the repository to deploy the docs
	contents: write

	strategy:
	matrix:
	os: [ubuntu-latest]

	steps:
	- name: Check-out repository
	uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: Configure Git Credentials
	run: \|
	git config user.name github-actions[bot]
	git config user.email github-actions[bot]@users.noreply.github.com

	- name: Install Pixi
	uses: prefix-dev/[email protected]
	with:
	pixi-version: v0.34.0
	cache: true
	locked: false

	- name: Build documentation
	run: pixi run build

	- name: Build and deploy documentation (only on push to main)
	if: github.ref == 'refs/heads/main' && github.event_name == 'push'
	run: pixi run mike deploy --push dev devel

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