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Create general profile that will be used for all pipelines #9

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jjjermiah opened this issue Apr 8, 2024 · 0 comments
Open

Create general profile that will be used for all pipelines #9

jjjermiah opened this issue Apr 8, 2024 · 0 comments
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feat New feature or request

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@jjjermiah
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  • need to figure out the location with the default

A global profile that is defined in a system-wide or user-specific configuration directory (on Linux, this will be $HOME/.config/snakemake and /etc/xdg/snakemake, you can find the answer for your system via snakemake --help).

A workflow specific profile (introduced in Snakemake 7.29) that is defined via a flag (--workflow-profile) or searched in a default location (profile/default) in the working directory or next to the Snakefile.

@jjjermiah jjjermiah added the feat New feature or request label Apr 8, 2024
@jjjermiah jjjermiah self-assigned this Apr 8, 2024
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