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docs: create an example PSet pipeline #7

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jjjermiah opened this issue Apr 8, 2024 · 1 comment

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jjjermiah commented Apr 8, 2024 •

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Pipeline should from start to finish cover most of what a user needs to build their pipeline

Minimum requirements:

Should download a file from HTTP
Should download a file from GS storage (snakemake 7.32.4)
Should use multiple wildcards
Should run a python script
Should run an R script
Should run a bash script
Should define resources
Should use a conda environment (with a post script)
Should use a docker container

jjjermiah added this to ORCESTRA 2.0

github-project-automation bot moved this to Todo in ORCESTRA 2.0

jjjermiah added the documentation label

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jjjermiah commented Apr 22, 2024

added here:

https://github.com/BHKLAB-DataProcessing/example-Snakemake_Pipeline

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