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Clinical Data Handling

This repository contains the code and data for preprocessing the clinical data from the HNSCC dataset on TCIA.

To Run

  1. Install pixi: https://pixi.sh/dev/#installation

  2. Activate the pixi environment:

$ pixi shell

  1. Open workflow/scripts/clinical_data_handling.ipynb in a Jupyter notebook.

  2. Select default kernel and run the notebook.