diff --git a/src/hostile/lib.py b/src/hostile/lib.py index a42bec9..cf8e4c8 100644 --- a/src/hostile/lib.py +++ b/src/hostile/lib.py @@ -58,7 +58,7 @@ # cdn_base_url="http://localhost:8000", # python -m http.server cdn_base_url=f"https://objectstorage.uk-london-1.oraclecloud.com/n/lrbvkel2wjot/b/human-genome-bucket/o", data_dir=XDG_DATA_DIR, - cmd="{BIN_PATH} -ax map-ont -m 50 --secondary no -t {THREADS} '{REF_ARCHIVE_PATH}' '{FASTQ}'", + cmd="{BIN_PATH} -ax map-ont -m 40 --secondary no -t {THREADS} '{REF_ARCHIVE_PATH}' '{FASTQ}'", paired_cmd="{BIN_PATH} -ax sr -m 40 --secondary no -t {THREADS} '{REF_ARCHIVE_PATH}' '{FASTQ1}' '{FASTQ2}'", ref_archive_fn="human-t2t-hla.fa.gz", idx_name="human-t2t-hla.fa.gz",