From 4e720a10fc7fbce01e5f72bba028ae54ee9c05f8 Mon Sep 17 00:00:00 2001
From: Bede Constantinides <bedeabc@gmail.com>
Date: Sat, 14 Dec 2024 01:19:14 +0000
Subject: [PATCH] Drop unused short name attr

---
 src/hostile/aligner.py | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/src/hostile/aligner.py b/src/hostile/aligner.py
index 95068b0..b033e75 100644
--- a/src/hostile/aligner.py
+++ b/src/hostile/aligner.py
@@ -13,7 +13,6 @@
 @dataclass
 class Aligner:
     name: str
-    short_name: str
     bin_path: Path
     data_dir: Path
     cmd: str
@@ -238,7 +237,6 @@ def gen_paired_clean_cmd(
     {
         "bowtie2": Aligner(
             name="Bowtie2",
-            short_name="bt2",
             bin_path=Path("bowtie2"),
             data_dir=util.CACHE_DIR,
             cmd=(
@@ -252,7 +250,6 @@ def gen_paired_clean_cmd(
         ),
         "minimap2": Aligner(
             name="Minimap2",
-            short_name="mm2",
             bin_path=Path("minimap2"),
             data_dir=util.CACHE_DIR,
             cmd="'{BIN_PATH}' -ax map-ont --secondary no -t {THREADS} {ALIGNER_ARGS} '{INDEX_PATH}' '{FASTQ}'",