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INSTALL.md

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Prerequisites

The processing programs in capcalc require the following to be installed first:

  • Python 2.x or 3.x
  • numpy
  • h5py

Installation

Once you have installed the prerequisites, cd into the package directory, and type the following:

python setup.py install

to install all of the tools in the package. You should be able to run them from the command line then (after rehashing).

Updating

If you've previously installed pysnirf and want to update, cd into the package directory and do a git pull first:

git pull
python setup.py install

Usage

Execute any of the commands to run capcalc on the sample data:

# run rapidtide2 to perform dynamic global signal regression (dGSR) on an fMRI file[1]:
snirftest

References

  1. Erdoğan S, Tong Y, Hocke L, Lindsey K, Frederick B (2016). Correcting resting state fMRI-BOLD signals for blood arrival time enhances functional connectivity analysis. Front. Hum. Neurosci., 28 June 2016 | http://dx.doi.org/10.3389/fnhum.2016.00311