From a5e69b12e74ec89da0e1876928fceb6120a4f3c0 Mon Sep 17 00:00:00 2001 From: Nick Croucher Date: Sat, 30 Nov 2024 08:53:43 +0000 Subject: [PATCH] Update beebop tests --- test/run_test.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/run_test.py b/test/run_test.py index 8a804480..8dad304d 100755 --- a/test/run_test.py +++ b/test/run_test.py @@ -134,7 +134,7 @@ subprocess.run(python_cmd + " ../poppunk-runner.py --fit-model dbscan --ref-db batch12 --output batch12 --overwrite", shell=True, check=True) subprocess.run(python_cmd + " ../poppunk-runner.py --fit-model refine --ref-db batch12 --output batch12 --overwrite", shell=True, check=True) subprocess.run(python_cmd + " ../poppunk_assign-runner.py --db batch12 --query rfile3.txt --output batch3 --external-clustering batch12_external_clusters.csv --save-partial-query-graph --overwrite", shell=True, check=True) -subprocess.run(python_cmd + " ../poppunk_visualise-runner.py --ref-db batch12 --query-db batch3 --output batch123_viz --external-clustering batch12_external_clusters.csv --previous-query-clustering batch3/batch3_external_clusters.csv --cytoscape --rapidnj rapidnj --use-partial-query-graph ./batch3/batch3_query.subset --recalculate-distances --overwrite", shell=True, check=True) +subprocess.run(python_cmd + " ../poppunk_visualise-runner.py --ref-db batch12 --query-db batch3 --output batch123_viz --external-clustering batch12_external_clusters.csv --previous-query-clustering batch3/batch3_external_clusters.csv --cytoscape --rapidnj rapidnj --use-partial-query-graph ./batch3/batch3_query.subset --recalculate-distances --extend-query-graph --overwrite", shell=True, check=True) # citations sys.stderr.write("Printing citations\n")