diff --git a/PopPUNK/network.py b/PopPUNK/network.py index 8df43e9b..2568e934 100644 --- a/PopPUNK/network.py +++ b/PopPUNK/network.py @@ -1890,7 +1890,7 @@ def sparse_mat_to_network(sparse_mat, rlist, use_gpu = False): return G -def prune_graph(prefix, reflist, passed, output_db_name, threads, use_gpu): +def prune_graph(prefix, reflist, samples_to_keep, output_db_name, threads, use_gpu): """Keep only the specified sequences in a graph Args: