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_site.yml
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_site.yml
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name: "Glia IHC"
title: "IHC and ML to Phenotype AD Glia"
description: |
APOE Glia
theme: theme.css
favicon: images/favicon.ico
base_url: https://serranopozolab.org/glia-ihc
repository_url: https://github.com/serrano-pozo-lab/glia-ihc
output_dir: "docs"
navbar:
search: false
source_url: https://github.com/serrano-pozo-lab/glia-ihc
right:
- text: "Home"
href: index.html
- text: "ROI Annotation"
menu:
- text: "Reorder Channels"
href: reorder-channels
- text: "---"
- text: "Astrocyte Channel Extraction"
href: aldh1l1-extraction
- text: "Microglia Channel Extraction"
href: iba1-extraction
- text: "Plaque Channel Extraction"
href: abeta-extraction
- text: "Tangle Channel Extraction"
href: phf1-extraction
- text: "ROI Segmentation"
menu:
- text: "Parse VIA ROIs"
href: parse-rois
- text: "ROI Segmentation"
href: roi-segmentation
- text: "Parse ROI Measurements"
href: parse-measurements
- text: "Unsupervised ML"
menu:
- text: "Spectral Clustering"
href: spectral-clustering
- text: "Dimensionality Reduction"
href: dimensionality-reduction
- text: "Data Visualization"
href: data-visualization
- text: "Supervised ML"
menu:
- text: "Partition by Condition"
href: partition-condition
- text: "Partition by State"
href: partition-state
- text: "---"
- text: "GBM by Condition"
href: gbm-condition
- text: "GBM by State"
href: gbm-state
- text: "---"
- text: "Astrocyte CNN"
href: astrocyte-cnn
- text: "Microglia CNN"
href: microglia-cnn
- text: "Plot ROC Curves"
href: plot-roc-curves
- text: "---"
- text: "Performance Evaluation"
href: performance-evaluation
output: distill::distill_article