.gitignore

# Mac
**/.DS_Store

Tutorial_API_BamTools-1.0.pdf
rmats/.ycm_extra_conf.py
rmats/asevent_core_backup.pyx
rmats/bamtools/build/
rmats/bamtools/lib/
rmats/bamtools/bin/
rmats/bamtools/include/
rmats/data/
rmats/build/
rmats/output/
*.tar

# graph
*.gml

# gcc
*.o
*.so

# py
*.pyc

# vim
*.swp

# gsl documentation and bin
gsl-ref.ps
x.lbfgsb*

# output
*.zip
*.png
*.ipynb
*.html
*.ai
.Rproj.user
bam_test/

DockerImage-rMATS-turbo-0.1.md
DockerImage-rMATS-turbo-0.1.pdf
rmats-turbo-0.1.tar.encrypted

s1.txt
s2.txt

# conda
/conda_envs/
/conda_requirements.txt

# build
/bamtools/build/
/bamtools/include/
/bamtools/bin/
/bamtools/lib/
/rMATS_pipeline/rmatspipeline/rmatspipeline.cpp
/rMATS_C/rMATSexe
/PAIRADISE/

# tests
/tests/test_config.py