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#Read Me This document should describe any tools included with the Varify client.

##fetchVcf command line to launch fetchVcf:

fetchVcf.py -s sample1 sample2 -r 1:1-100000,2:1-100000

This can be used to combine multiple samples into a single VCF file, even if the source data are from different runs.

##Setup

  • Go to http://yourvarifyinstance.chop.edu/admin/serrano/apitoken/
  • Add API Token and your varify instance to the configuration file and name it varify.cfg (see the sample config included)