From 7b61aa515abb9fd88db5c1bf8dc8e225c20941fe Mon Sep 17 00:00:00 2001 From: Jeremy Arbesfeld Date: Fri, 25 Oct 2024 08:45:39 -0400 Subject: [PATCH 1/2] Update README to indicate 0.1.3 dcd-mapping release --- notebooks/analysis/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/notebooks/analysis/README.md b/notebooks/analysis/README.md index ed622cd..5d79968 100644 --- a/notebooks/analysis/README.md +++ b/notebooks/analysis/README.md @@ -6,7 +6,7 @@ Code for data analysis and figure generation for ["Mapping MAVE data for use in * [`mapping_analysis.ipynb`](mapping_analysis.ipynb): This notebook computes reference sequence concordance across the generated VRS mapping pairs. The notebook also computes the number of unique pre-mapped and post-mapped variants. * [`mavedb_scoreset_breakdown.ipynb`](mavedb_scoreset_breakdown.ipynb): This notebook generates the summary statistics that are described in the manuscript. -**Note that these notebooks may not be using the most recent release of the `dcd_mapping` library** -- they are intended to reflect the state of the code at the time of artifact generation, without any features that have been added since. The included `requirements.txt` file should produce an environment matching this expectation. +**Note that these notebooks are using the 0.1.3 release of the `dcd_mapping` library** -- they are intended to reflect the state of the code at the time of artifact generation, without any features that have been added since. The included `requirements.txt` file should produce an environment matching this expectation. ## Environment From 661c742921728a75afe260d9048abcba3323074e Mon Sep 17 00:00:00 2001 From: Jeremy Arbesfeld Date: Tue, 29 Oct 2024 09:31:53 -0400 Subject: [PATCH 2/2] Add URL to README --- notebooks/analysis/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/notebooks/analysis/README.md b/notebooks/analysis/README.md index 5d79968..58c0a6c 100644 --- a/notebooks/analysis/README.md +++ b/notebooks/analysis/README.md @@ -6,7 +6,7 @@ Code for data analysis and figure generation for ["Mapping MAVE data for use in * [`mapping_analysis.ipynb`](mapping_analysis.ipynb): This notebook computes reference sequence concordance across the generated VRS mapping pairs. The notebook also computes the number of unique pre-mapped and post-mapped variants. * [`mavedb_scoreset_breakdown.ipynb`](mavedb_scoreset_breakdown.ipynb): This notebook generates the summary statistics that are described in the manuscript. -**Note that these notebooks are using the 0.1.3 release of the `dcd_mapping` library** -- they are intended to reflect the state of the code at the time of artifact generation, without any features that have been added since. The included `requirements.txt` file should produce an environment matching this expectation. +**Note that these notebooks are using the [0.1.3 release](https://github.com/ave-dcd/dcd_mapping/releases/tag/0.1.3) of the `dcd_mapping` library** -- they are intended to reflect the state of the code at the time of artifact generation, without any features that have been added since. The included `requirements.txt` file should produce an environment matching this expectation. ## Environment