Inputs and outputs for mapping

[samriddhi99]

Currently the inputs being taken are entire scoresets. Out of all the data in the scoreset, only the urn, target sequence, uniprot, and target type are required for the mapping. In order to make it more efficient, is there a better way to obtain this data, instead of requiring an entire scoreset to be an input?

Additionally, in accordance with the new/anticipated changes in MaveDB, TaxID can be taken as an input to obtain additional required data.

[ahwagner]

This software should have as an input a target sequence, a set of variants represented on that sequence, and the sequence alphabet type (nucleic acid, amino acid)

The format for this can be specified by you.

The output format can also be specified by you, but should include:

• the mapped sequence and associated metadata (minimally the refget and refseq sequence identifiers)
• the mapping relationship (e.g. "homologous_to")
• each original variant and its mapped variant