checks.yaml

name: Checks
on: [push, pull_request]
jobs:
  test:
    name: test py${{ matrix.python-version }}
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.10", "3.11", "3.12"]
    steps:
      - uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install dependencies
        run: |
          python3 -m pip install ".[tests]"

      - name: Run tests
        # only run tests known to work in CI
        run: python3 -m pytest tests/test_mavedb_data.py tests/test_vrs_map.py tests/test_annotate.py
  lint:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: 3.11

      - name: Install dependencies
        run: python3 -m pip install ".[dev]"

      - name: Check style
        run: python3 -m ruff check . && python3 -m ruff format --check .