Filtering the list of RNA-binding proteins, experiments, and binding sites #19

avantikalal · 2020-04-05T18:39:10Z

We currently have a basic R pipeline that gives us a list of potential binding sites for human RBPs on the SARS-CoV-2 genome. See https://github.com/avantikalal/covid-gene-expression/tree/master/project/human-RBP-analysis for details.

Filter PWMs used as input by information content.

avantikalal changed the title ~~Filtering the list of RNA-binding proteins and experiments~~ Filtering the list of RNA-binding proteins, experiments, and binding sites Apr 5, 2020

This was referenced Apr 6, 2020

Check conservation of RBP binding sites in different SARS-CoV-2 isolates #23

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Annotate RBP binding sites #24

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avantikalal self-assigned this Apr 9, 2020

avantikalal mentioned this issue Apr 9, 2020

Check DE lists for selected human RBPs #55

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avantikalal closed this as completed Apr 10, 2020

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Filtering the list of RNA-binding proteins, experiments, and binding sites #19

Filtering the list of RNA-binding proteins, experiments, and binding sites #19

avantikalal commented Apr 5, 2020 •

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Filtering the list of RNA-binding proteins, experiments, and binding sites #19

Filtering the list of RNA-binding proteins, experiments, and binding sites #19

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avantikalal commented Apr 5, 2020 • edited Loading

avantikalal commented Apr 5, 2020 •

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