alex_setPath.m

function alex_setPath

warning off MATLAB:dispatcher:nameConflict

run(getLocalPath('/lab/users/alex/projects/mym/mymSetup'))

base = fileparts(mfilename('fullpath'));
addpath(base)

% user specific DJ connection parameters (uses Alex' credentials)
initDJ();
fprintf('Datajoint connection\n')
fprintf('--------------------\n')
fprintf('host: %s\n', getenv('DJ_HOST'))
fprintf('user: %s\n\n', getenv('DJ_USER'))

addpath(fullfile(base, 'processing'))
addpath(fullfile(base, 'processing/sync'))
addpath(fullfile(base, 'processing/utils'))
addpath(fullfile(base, 'recovery'))
addpath(fullfile(base, 'schemas'))
addpath(fullfile(base, 'migration'))
addpath(fullfile(base, 'sortgui'))
addpath(fullfile(base, 'sortgui/lib'))

% DataJoint library is assumed to be in the same directory as the base
% diretory
ndx = find(base == filesep, 1, 'last');
run(fullfile(base(1:ndx-1), 'datajoint/setPath.m'))

% HDF5 utils
run(fullfile(base(1:ndx-1), 'hdf5matlab/setPath.m'))

% spike detection
run(fullfile(base(1:ndx-1), 'ephys-preprocessing/setPath.m'))

% spike sorting
addpath(fullfile(base(1:ndx-1), 'moksm'))

warning on MATLAB:dispatcher:nameConflict