From 5a5423f7f3d9e53eedcbd10fa6cfbca4ddb7dd93 Mon Sep 17 00:00:00 2001 From: Andrew Riha Date: Sat, 4 May 2024 21:03:42 -0700 Subject: [PATCH] Fix GenomePrep resources --- src/snps/resources.py | 12 ++++++++++-- 1 file changed, 10 insertions(+), 2 deletions(-) diff --git a/src/snps/resources.py b/src/snps/resources.py index 0f7c89a..3618123 100644 --- a/src/snps/resources.py +++ b/src/snps/resources.py @@ -287,10 +287,14 @@ def get_chip_clusters(self): (GenomePrep) for research, Computational and Structural Biotechnology Journal, Volume 19, 2021, Pages 3747-3754, ISSN 2001-0370, https://doi.org/10.1016/j.csbj.2021.06.040. + 2. Lu, Tzovaras, & Gough. (2021). OpenSNP data-freeze of 5,393 + (19.10.2020) [Data set]. In Computational and Structural + Biotechnology Journal. Zenodo. + https://doi.org/10.1016/j.csbj.2021.06.040 """ if self._chip_clusters is None: chip_clusters_path = self._download_file( - "https://supfam.mrc-lmb.cam.ac.uk/GenomePrep/datadir/the_list.tsv.gz", + "https://zenodo.org/records/5047472/files/the_list.tsv.gz", "chip_clusters.tsv.gz", ) @@ -325,10 +329,14 @@ def get_low_quality_snps(self): (GenomePrep) for research, Computational and Structural Biotechnology Journal, Volume 19, 2021, Pages 3747-3754, ISSN 2001-0370, https://doi.org/10.1016/j.csbj.2021.06.040. + 2. Lu, Tzovaras, & Gough. (2021). OpenSNP data-freeze of 5,393 + (19.10.2020) [Data set]. In Computational and Structural + Biotechnology Journal. Zenodo. + https://doi.org/10.1016/j.csbj.2021.06.040 """ if self._low_quality_snps is None: low_quality_snps_path = self._download_file( - "https://supfam.mrc-lmb.cam.ac.uk/GenomePrep/datadir/badalleles.tsv.gz", + "https://zenodo.org/records/5047472/files/badalleles.tsv.gz", "low_quality_snps.tsv.gz", )