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[SPARK-24364][SS] Prevent InMemoryFileIndex from failing if file path…
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… doesn't exist

## What changes were proposed in this pull request?

This PR proposes to follow up #15153 and complete SPARK-17599.

`FileSystem` operation (`fs.getFileBlockLocations`) can still fail if the file path does not exist. For example see the exception message below:

```
Error occurred while processing: File does not exist: /rel/00171151/input/PJ/part-00136-b6403bac-a240-44f8-a792-fc2e174682b7-c000.csv
...
java.io.FileNotFoundException: File does not exist: /rel/00171151/input/PJ/part-00136-b6403bac-a240-44f8-a792-fc2e174682b7-c000.csv
...
org.apache.hadoop.hdfs.DistributedFileSystem.getFileBlockLocations(DistributedFileSystem.java:249)
	at org.apache.hadoop.hdfs.DistributedFileSystem.getFileBlockLocations(DistributedFileSystem.java:229)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$listLeafFiles$3.apply(InMemoryFileIndex.scala:314)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$listLeafFiles$3.apply(InMemoryFileIndex.scala:297)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
	at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:186)
	at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
	at scala.collection.mutable.ArrayOps$ofRef.map(ArrayOps.scala:186)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$.org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$listLeafFiles(InMemoryFileIndex.scala:297)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$bulkListLeafFiles$1.apply(InMemoryFileIndex.scala:174)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$bulkListLeafFiles$1.apply(InMemoryFileIndex.scala:173)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
	at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
	at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
	at scala.collection.AbstractTraversable.map(Traversable.scala:104)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$.org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$bulkListLeafFiles(InMemoryFileIndex.scala:173)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.listLeafFiles(InMemoryFileIndex.scala:126)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.refresh0(InMemoryFileIndex.scala:91)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.<init>(InMemoryFileIndex.scala:67)
	at org.apache.spark.sql.execution.datasources.DataSource.tempFileIndex$lzycompute$1(DataSource.scala:161)
	at org.apache.spark.sql.execution.datasources.DataSource.org$apache$spark$sql$execution$datasources$DataSource$$tempFileIndex$1(DataSource.scala:152)
	at org.apache.spark.sql.execution.datasources.DataSource.getOrInferFileFormatSchema(DataSource.scala:166)
	at org.apache.spark.sql.execution.datasources.DataSource.sourceSchema(DataSource.scala:261)
	at org.apache.spark.sql.execution.datasources.DataSource.sourceInfo$lzycompute(DataSource.scala:94)
	at org.apache.spark.sql.execution.datasources.DataSource.sourceInfo(DataSource.scala:94)
	at org.apache.spark.sql.execution.streaming.StreamingRelation$.apply(StreamingRelation.scala:33)
	at org.apache.spark.sql.streaming.DataStreamReader.load(DataStreamReader.scala:196)
	at org.apache.spark.sql.streaming.DataStreamReader.load(DataStreamReader.scala:206)
	at com.hwx.StreamTest$.main(StreamTest.scala:97)
	at com.hwx.StreamTest.main(StreamTest.scala)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
	at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:906)
	at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:197)
	at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:227)
	at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:136)
	at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: org.apache.hadoop.ipc.RemoteException(java.io.FileNotFoundException): File does not exist: /rel/00171151/input/PJ/part-00136-b6403bac-a240-44f8-a792-fc2e174682b7-c000.csv
...
```

So, it fixes it to make a warning instead.

## How was this patch tested?

It's hard to write a test. Manually tested multiple times.

Author: hyukjinkwon <[email protected]>

Closes #21408 from HyukjinKwon/missing-files.
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HyukjinKwon committed May 24, 2018
1 parent e108f84 commit 8a54582
Showing 1 changed file with 24 additions and 8 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -294,9 +294,12 @@ object InMemoryFileIndex extends Logging {
if (filter != null) allFiles.filter(f => filter.accept(f.getPath)) else allFiles
}

allLeafStatuses.filterNot(status => shouldFilterOut(status.getPath.getName)).map {
val missingFiles = mutable.ArrayBuffer.empty[String]
val filteredLeafStatuses = allLeafStatuses.filterNot(
status => shouldFilterOut(status.getPath.getName))
val resolvedLeafStatuses = filteredLeafStatuses.flatMap {
case f: LocatedFileStatus =>
f
Some(f)

// NOTE:
//
Expand All @@ -311,14 +314,27 @@ object InMemoryFileIndex extends Logging {
// The other constructor of LocatedFileStatus will call FileStatus.getPermission(),
// which is very slow on some file system (RawLocalFileSystem, which is launch a
// subprocess and parse the stdout).
val locations = fs.getFileBlockLocations(f, 0, f.getLen)
val lfs = new LocatedFileStatus(f.getLen, f.isDirectory, f.getReplication, f.getBlockSize,
f.getModificationTime, 0, null, null, null, null, f.getPath, locations)
if (f.isSymlink) {
lfs.setSymlink(f.getSymlink)
try {
val locations = fs.getFileBlockLocations(f, 0, f.getLen)
val lfs = new LocatedFileStatus(f.getLen, f.isDirectory, f.getReplication, f.getBlockSize,
f.getModificationTime, 0, null, null, null, null, f.getPath, locations)
if (f.isSymlink) {
lfs.setSymlink(f.getSymlink)
}
Some(lfs)
} catch {
case _: FileNotFoundException =>
missingFiles += f.getPath.toString
None
}
lfs
}

if (missingFiles.nonEmpty) {
logWarning(
s"the following files were missing during file scan:\n ${missingFiles.mkString("\n ")}")
}

resolvedLeafStatuses
}

/** Checks if we should filter out this path name. */
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