diff --git a/src/main/java/org/apache/maven/shared/invoker/Invoker.java b/src/main/java/org/apache/maven/shared/invoker/Invoker.java
index 51cd6c1..869d29e 100644
--- a/src/main/java/org/apache/maven/shared/invoker/Invoker.java
+++ b/src/main/java/org/apache/maven/shared/invoker/Invoker.java
@@ -127,7 +127,10 @@ InvocationResult execute( InvocationRequest request )
      * @param workingDirectory The working directory for the Maven invocation, may be <code>null</code> to derive the
      *            working directory from the base directory of the processed POM.
      * @return This invoker instance.
+     *
+     * @deprecated Please use {@link InvocationRequest#setBaseDirectory(File)}
      */
+    @Deprecated
     Invoker setWorkingDirectory( File workingDirectory );
 
     /**
@@ -137,7 +140,10 @@ InvocationResult execute( InvocationRequest request )
      * @param inputStream The input stream used to provide input for the invoked Maven build, may be <code>null</code>
      *            if not required.
      * @return This invoker instance.
+     *
+     * @deprecated Please use {@link InvocationRequest#setInputStream(InputStream)}
      */
+    @Deprecated
     Invoker setInputStream( InputStream inputStream );
 
     /**
@@ -145,7 +151,10 @@ InvocationResult execute( InvocationRequest request )
      *
      * @param outputHandler The output handler, may be <code>null</code> if the output is not of interest.
      * @return This invoker instance.
+     *
+     * @deprecated Please use {@link InvocationRequest#setOutputHandler(InvocationOutputHandler)}
      */
+    @Deprecated
     Invoker setOutputHandler( InvocationOutputHandler outputHandler );
 
     /**
@@ -153,6 +162,9 @@ InvocationResult execute( InvocationRequest request )
      *
      * @param errorHandler The error handler, may be <code>null</code> if the output is not of interest.
      * @return This invoker instance.
+     *
+     * @deprecated Pleas use {@link InvocationRequest#setErrorHandler(InvocationOutputHandler)}
      */
+    @Deprecated
     Invoker setErrorHandler( InvocationOutputHandler errorHandler );
 }
diff --git a/src/site/apt/index.apt.vm b/src/site/apt/index.apt.vm
index 59f1106..5403602 100644
--- a/src/site/apt/index.apt.vm
+++ b/src/site/apt/index.apt.vm
@@ -50,15 +50,9 @@ ${project.name}
   * Global Options:
   
     * Maven-Home Location (location of Maven application directory)
-  
-    * Global Checksum policy (fail/warn, global across defined repositories)
-    
+
     * Local Repository Location
-    
-    * Working Directory
-    
-    * Input/Output Handlers
-    
+
     * API Logger
     
     * Maven Executable