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viz.py
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viz.py
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# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
# pylint: disable=C,R,W
"""This module contains the 'Viz' objects
These objects represent the backend of all the visualizations that
Superset can render.
"""
import copy
import hashlib
import inspect
import logging
import math
import pickle as pkl
import re
import uuid
from collections import defaultdict, OrderedDict
from datetime import datetime, timedelta
from functools import reduce
from itertools import product
from typing import Any, Dict, List, Optional, Tuple, TYPE_CHECKING
import geohash
import numpy as np
import pandas as pd
import polyline
import simplejson as json
from dateutil import relativedelta as rdelta
from flask import request
from flask_babel import lazy_gettext as _
from geopy.point import Point
from markdown import markdown
from pandas.tseries.frequencies import to_offset
from superset import app, cache, get_css_manifest_files
from superset.constants import NULL_STRING
from superset.exceptions import NullValueException, SpatialException
from superset.models.helpers import QueryResult
from superset.utils import core as utils
from superset.utils.core import (
DTTM_ALIAS,
JS_MAX_INTEGER,
merge_extra_filters,
to_adhoc,
)
if TYPE_CHECKING:
from superset.connectors.base.models import BaseDatasource
config = app.config
stats_logger = config["STATS_LOGGER"]
relative_start = config["DEFAULT_RELATIVE_START_TIME"]
relative_end = config["DEFAULT_RELATIVE_END_TIME"]
METRIC_KEYS = [
"metric",
"metrics",
"percent_metrics",
"metric_2",
"secondary_metric",
"x",
"y",
"size",
]
class BaseViz:
"""All visualizations derive this base class"""
viz_type: Optional[str] = None
verbose_name = "Base Viz"
credits = ""
is_timeseries = False
cache_type = "df"
enforce_numerical_metrics = True
def __init__(
self,
datasource: "BaseDatasource",
form_data: Dict[str, Any],
force: bool = False,
):
if not datasource:
raise Exception(_("Viz is missing a datasource"))
self.datasource = datasource
self.request = request
self.viz_type = form_data.get("viz_type")
self.form_data = form_data
self.query = ""
self.token = self.form_data.get("token", "token_" + uuid.uuid4().hex[:8])
self.groupby = self.form_data.get("groupby") or []
self.time_shift = timedelta()
self.status = None
self.error_msg = ""
self.results: Optional[QueryResult] = None
self.error_message = None
self.force = force
# Keeping track of whether some data came from cache
# this is useful to trigger the <CachedLabel /> when
# in the cases where visualization have many queries
# (FilterBox for instance)
self._any_cache_key: Optional[str] = None
self._any_cached_dttm: Optional[str] = None
self._extra_chart_data: List[Tuple[str, pd.DataFrame]] = []
self.process_metrics()
def process_metrics(self):
# metrics in TableViz is order sensitive, so metric_dict should be
# OrderedDict
self.metric_dict = OrderedDict()
fd = self.form_data
for mkey in METRIC_KEYS:
val = fd.get(mkey)
if val:
if not isinstance(val, list):
val = [val]
for o in val:
label = utils.get_metric_name(o)
self.metric_dict[label] = o
# Cast to list needed to return serializable object in py3
self.all_metrics = list(self.metric_dict.values())
self.metric_labels = list(self.metric_dict.keys())
@staticmethod
def handle_js_int_overflow(data):
for d in data.get("records", dict()):
for k, v in list(d.items()):
if isinstance(v, int):
# if an int is too big for Java Script to handle
# convert it to a string
if abs(v) > JS_MAX_INTEGER:
d[k] = str(v)
return data
def run_extra_queries(self):
"""Lifecycle method to use when more than one query is needed
In rare-ish cases, a visualization may need to execute multiple
queries. That is the case for FilterBox or for time comparison
in Line chart for instance.
In those cases, we need to make sure these queries run before the
main `get_payload` method gets called, so that the overall caching
metadata can be right. The way it works here is that if any of
the previous `get_df_payload` calls hit the cache, the main
payload's metadata will reflect that.
The multi-query support may need more work to become a first class
use case in the framework, and for the UI to reflect the subtleties
(show that only some of the queries were served from cache for
instance). In the meantime, since multi-query is rare, we treat
it with a bit of a hack. Note that the hack became necessary
when moving from caching the visualization's data itself, to caching
the underlying query(ies).
"""
pass
def get_samples(self):
query_obj = self.query_obj()
query_obj.update(
{
"groupby": [],
"metrics": [],
"row_limit": 1000,
"columns": [o.column_name for o in self.datasource.columns],
}
)
df = self.get_df(query_obj)
return df.to_dict(orient="records")
def get_df(
self, query_obj: Optional[Dict[str, Any]] = None
) -> Optional[pd.DataFrame]:
"""Returns a pandas dataframe based on the query object"""
if not query_obj:
query_obj = self.query_obj()
if not query_obj:
return None
self.error_msg = ""
timestamp_format = None
if self.datasource.type == "table":
granularity_col = self.datasource.get_column(query_obj["granularity"])
if granularity_col:
timestamp_format = granularity_col.python_date_format
# The datasource here can be different backend but the interface is common
self.results = self.datasource.query(query_obj)
self.query = self.results.query
self.status = self.results.status
self.error_message = self.results.error_message
df = self.results.df
# Transform the timestamp we received from database to pandas supported
# datetime format. If no python_date_format is specified, the pattern will
# be considered as the default ISO date format
# If the datetime format is unix, the parse will use the corresponding
# parsing logic.
if df is not None and not df.empty:
if DTTM_ALIAS in df.columns:
if timestamp_format in ("epoch_s", "epoch_ms"):
# Column has already been formatted as a timestamp.
dttm_col = df[DTTM_ALIAS]
one_ts_val = dttm_col[0]
# convert time column to pandas Timestamp, but different
# ways to convert depending on string or int types
try:
int(one_ts_val)
is_integral = True
except (ValueError, TypeError):
is_integral = False
if is_integral:
unit = "s" if timestamp_format == "epoch_s" else "ms"
df[DTTM_ALIAS] = pd.to_datetime(
dttm_col, utc=False, unit=unit, origin="unix"
)
else:
df[DTTM_ALIAS] = dttm_col.apply(pd.Timestamp)
else:
df[DTTM_ALIAS] = pd.to_datetime(
df[DTTM_ALIAS], utc=False, format=timestamp_format
)
if self.datasource.offset:
df[DTTM_ALIAS] += timedelta(hours=self.datasource.offset)
df[DTTM_ALIAS] += self.time_shift
if self.enforce_numerical_metrics:
self.df_metrics_to_num(df)
df.replace([np.inf, -np.inf], np.nan, inplace=True)
return df
def df_metrics_to_num(self, df):
"""Converting metrics to numeric when pandas.read_sql cannot"""
metrics = self.metric_labels
for col, dtype in df.dtypes.items():
if dtype.type == np.object_ and col in metrics:
df[col] = pd.to_numeric(df[col], errors="coerce")
def process_query_filters(self):
utils.convert_legacy_filters_into_adhoc(self.form_data)
merge_extra_filters(self.form_data)
utils.split_adhoc_filters_into_base_filters(self.form_data)
def query_obj(self) -> Dict[str, Any]:
"""Building a query object"""
form_data = self.form_data
self.process_query_filters()
gb = form_data.get("groupby") or []
metrics = self.all_metrics or []
columns = form_data.get("columns") or []
groupby = list(set(gb + columns))
is_timeseries = self.is_timeseries
if DTTM_ALIAS in groupby:
groupby.remove(DTTM_ALIAS)
is_timeseries = True
granularity = form_data.get("granularity") or form_data.get("granularity_sqla")
limit = int(form_data.get("limit") or 0)
timeseries_limit_metric = form_data.get("timeseries_limit_metric")
row_limit = int(form_data.get("row_limit") or config["ROW_LIMIT"])
# default order direction
order_desc = form_data.get("order_desc", True)
since, until = utils.get_since_until(
relative_start=relative_start,
relative_end=relative_end,
time_range=form_data.get("time_range"),
since=form_data.get("since"),
until=form_data.get("until"),
)
time_shift = form_data.get("time_shift", "")
self.time_shift = utils.parse_past_timedelta(time_shift)
from_dttm = None if since is None else (since - self.time_shift)
to_dttm = None if until is None else (until - self.time_shift)
if from_dttm and to_dttm and from_dttm > to_dttm:
raise Exception(_("From date cannot be larger than to date"))
self.from_dttm = from_dttm
self.to_dttm = to_dttm
# extras are used to query elements specific to a datasource type
# for instance the extra where clause that applies only to Tables
extras = {
"druid_time_origin": form_data.get("druid_time_origin", ""),
"having": form_data.get("having", ""),
"having_druid": form_data.get("having_filters", []),
"time_grain_sqla": form_data.get("time_grain_sqla", ""),
"time_range_endpoints": form_data.get("time_range_endpoints"),
"where": form_data.get("where", ""),
}
d = {
"granularity": granularity,
"from_dttm": from_dttm,
"to_dttm": to_dttm,
"is_timeseries": is_timeseries,
"groupby": groupby,
"metrics": metrics,
"row_limit": row_limit,
"filter": self.form_data.get("filters", []),
"timeseries_limit": limit,
"extras": extras,
"timeseries_limit_metric": timeseries_limit_metric,
"order_desc": order_desc,
}
return d
@property
def cache_timeout(self):
if self.form_data.get("cache_timeout") is not None:
return int(self.form_data.get("cache_timeout"))
if self.datasource.cache_timeout is not None:
return self.datasource.cache_timeout
if (
hasattr(self.datasource, "database")
and self.datasource.database.cache_timeout
) is not None:
return self.datasource.database.cache_timeout
return config["CACHE_DEFAULT_TIMEOUT"]
def get_json(self):
return json.dumps(
self.get_payload(), default=utils.json_int_dttm_ser, ignore_nan=True
)
def cache_key(self, query_obj, **extra):
"""
The cache key is made out of the key/values in `query_obj`, plus any
other key/values in `extra`.
We remove datetime bounds that are hard values, and replace them with
the use-provided inputs to bounds, which may be time-relative (as in
"5 days ago" or "now").
The `extra` arguments are currently used by time shift queries, since
different time shifts wil differ only in the `from_dttm` and `to_dttm`
values which are stripped.
"""
cache_dict = copy.copy(query_obj)
cache_dict.update(extra)
for k in ["from_dttm", "to_dttm"]:
del cache_dict[k]
cache_dict["time_range"] = self.form_data.get("time_range")
cache_dict["datasource"] = self.datasource.uid
cache_dict["extra_cache_keys"] = self.datasource.get_extra_cache_keys(query_obj)
json_data = self.json_dumps(cache_dict, sort_keys=True)
return hashlib.md5(json_data.encode("utf-8")).hexdigest()
def get_payload(self, query_obj=None):
"""Returns a payload of metadata and data"""
self.run_extra_queries()
payload = self.get_df_payload(query_obj)
df = payload.get("df")
if self.status != utils.QueryStatus.FAILED:
if df is not None and df.empty:
payload["error"] = "No data"
else:
payload["data"] = self.get_data(df)
if "df" in payload:
del payload["df"]
return payload
def get_df_payload(self, query_obj=None, **kwargs):
"""Handles caching around the df payload retrieval"""
if not query_obj:
query_obj = self.query_obj()
cache_key = self.cache_key(query_obj, **kwargs) if query_obj else None
logging.info("Cache key: {}".format(cache_key))
is_loaded = False
stacktrace = None
df = None
cached_dttm = datetime.utcnow().isoformat().split(".")[0]
if cache_key and cache and not self.force:
cache_value = cache.get(cache_key)
if cache_value:
stats_logger.incr("loaded_from_cache")
try:
cache_value = pkl.loads(cache_value)
df = cache_value["df"]
self.query = cache_value["query"]
self._any_cached_dttm = cache_value["dttm"]
self._any_cache_key = cache_key
self.status = utils.QueryStatus.SUCCESS
is_loaded = True
except Exception as e:
logging.exception(e)
logging.error(
"Error reading cache: " + utils.error_msg_from_exception(e)
)
logging.info("Serving from cache")
if query_obj and not is_loaded:
try:
df = self.get_df(query_obj)
if self.status != utils.QueryStatus.FAILED:
stats_logger.incr("loaded_from_source")
is_loaded = True
except Exception as e:
logging.exception(e)
if not self.error_message:
self.error_message = "{}".format(e)
self.status = utils.QueryStatus.FAILED
stacktrace = utils.get_stacktrace()
if (
is_loaded
and cache_key
and cache
and self.status != utils.QueryStatus.FAILED
):
try:
cache_value = dict(
dttm=cached_dttm,
df=df if df is not None else None,
query=self.query,
)
cache_value = pkl.dumps(cache_value, protocol=pkl.HIGHEST_PROTOCOL)
logging.info(
"Caching {} chars at key {}".format(len(cache_value), cache_key)
)
stats_logger.incr("set_cache_key")
cache.set(cache_key, cache_value, timeout=self.cache_timeout)
except Exception as e:
# cache.set call can fail if the backend is down or if
# the key is too large or whatever other reasons
logging.warning("Could not cache key {}".format(cache_key))
logging.exception(e)
cache.delete(cache_key)
return {
"cache_key": self._any_cache_key,
"cached_dttm": self._any_cached_dttm,
"cache_timeout": self.cache_timeout,
"df": df,
"error": self.error_message,
"form_data": self.form_data,
"is_cached": self._any_cache_key is not None,
"query": self.query,
"status": self.status,
"stacktrace": stacktrace,
"rowcount": len(df.index) if df is not None else 0,
}
def json_dumps(self, obj, sort_keys=False):
return json.dumps(
obj, default=utils.json_int_dttm_ser, ignore_nan=True, sort_keys=sort_keys
)
def payload_json_and_has_error(self, payload):
has_error = (
payload.get("status") == utils.QueryStatus.FAILED
or payload.get("error") is not None
)
return self.json_dumps(payload), has_error
@property
def data(self):
"""This is the data object serialized to the js layer"""
content = {
"form_data": self.form_data,
"token": self.token,
"viz_name": self.viz_type,
"filter_select_enabled": self.datasource.filter_select_enabled,
}
return content
def get_csv(self):
df = self.get_df()
include_index = not isinstance(df.index, pd.RangeIndex)
return df.to_csv(index=include_index, **config["CSV_EXPORT"])
def get_data(self, df):
return df.to_dict(orient="records")
@property
def json_data(self):
return json.dumps(self.data)
class TableViz(BaseViz):
"""A basic html table that is sortable and searchable"""
viz_type = "table"
verbose_name = _("Table View")
credits = 'a <a href="https://github.com/airbnb/superset">Superset</a> original'
is_timeseries = False
enforce_numerical_metrics = False
def should_be_timeseries(self):
fd = self.form_data
# TODO handle datasource-type-specific code in datasource
conditions_met = (fd.get("granularity") and fd.get("granularity") != "all") or (
fd.get("granularity_sqla") and fd.get("time_grain_sqla")
)
if fd.get("include_time") and not conditions_met:
raise Exception(
_("Pick a granularity in the Time section or " "uncheck 'Include Time'")
)
return fd.get("include_time")
def query_obj(self):
d = super().query_obj()
fd = self.form_data
if fd.get("all_columns") and (fd.get("groupby") or fd.get("metrics")):
raise Exception(
_(
"Choose either fields to [Group By] and [Metrics] or "
"[Columns], not both"
)
)
sort_by = fd.get("timeseries_limit_metric")
if fd.get("all_columns"):
d["columns"] = fd.get("all_columns")
d["groupby"] = []
order_by_cols = fd.get("order_by_cols") or []
d["orderby"] = [json.loads(t) for t in order_by_cols]
elif sort_by:
sort_by_label = utils.get_metric_name(sort_by)
if sort_by_label not in utils.get_metric_names(d["metrics"]):
d["metrics"] += [sort_by]
d["orderby"] = [(sort_by, not fd.get("order_desc", True))]
# Add all percent metrics that are not already in the list
if "percent_metrics" in fd:
d["metrics"] = d["metrics"] + list(
filter(lambda m: m not in d["metrics"], fd["percent_metrics"] or [])
)
d["is_timeseries"] = self.should_be_timeseries()
return d
def get_data(self, df):
fd = self.form_data
if not self.should_be_timeseries() and df is not None and DTTM_ALIAS in df:
del df[DTTM_ALIAS]
# Sum up and compute percentages for all percent metrics
percent_metrics = fd.get("percent_metrics") or []
percent_metrics = [utils.get_metric_name(m) for m in percent_metrics]
if len(percent_metrics):
percent_metrics = list(filter(lambda m: m in df, percent_metrics))
metric_sums = {
m: reduce(lambda a, b: a + b, df[m]) for m in percent_metrics
}
metric_percents = {
m: list(
map(
lambda a: None if metric_sums[m] == 0 else a / metric_sums[m],
df[m],
)
)
for m in percent_metrics
}
for m in percent_metrics:
m_name = "%" + m
df[m_name] = pd.Series(metric_percents[m], name=m_name)
# Remove metrics that are not in the main metrics list
metrics = fd.get("metrics") or []
metrics = [utils.get_metric_name(m) for m in metrics]
for m in filter(
lambda m: m not in metrics and m in df.columns, percent_metrics
):
del df[m]
data = self.handle_js_int_overflow(
dict(records=df.to_dict(orient="records"), columns=list(df.columns))
)
return data
def json_dumps(self, obj, sort_keys=False):
return json.dumps(
obj, default=utils.json_iso_dttm_ser, sort_keys=sort_keys, ignore_nan=True
)
class TimeTableViz(BaseViz):
"""A data table with rich time-series related columns"""
viz_type = "time_table"
verbose_name = _("Time Table View")
credits = 'a <a href="https://github.com/airbnb/superset">Superset</a> original'
is_timeseries = True
def query_obj(self):
d = super().query_obj()
fd = self.form_data
if not fd.get("metrics"):
raise Exception(_("Pick at least one metric"))
if fd.get("groupby") and len(fd.get("metrics")) > 1:
raise Exception(
_("When using 'Group By' you are limited to use a single metric")
)
return d
def get_data(self, df):
fd = self.form_data
columns = None
values = self.metric_labels
if fd.get("groupby"):
values = self.metric_labels[0]
columns = fd.get("groupby")
pt = df.pivot_table(index=DTTM_ALIAS, columns=columns, values=values)
pt.index = pt.index.map(str)
pt = pt.sort_index()
return dict(
records=pt.to_dict(orient="index"),
columns=list(pt.columns),
is_group_by=len(fd.get("groupby")) > 0,
)
class PivotTableViz(BaseViz):
"""A pivot table view, define your rows, columns and metrics"""
viz_type = "pivot_table"
verbose_name = _("Pivot Table")
credits = 'a <a href="https://github.com/airbnb/superset">Superset</a> original'
is_timeseries = False
def query_obj(self):
d = super().query_obj()
groupby = self.form_data.get("groupby")
columns = self.form_data.get("columns")
metrics = self.form_data.get("metrics")
transpose = self.form_data.get("transpose_pivot")
if not columns:
columns = []
if not groupby:
groupby = []
if not groupby:
raise Exception(_("Please choose at least one 'Group by' field "))
if transpose and not columns:
raise Exception(
_(
(
"Please choose at least one 'Columns' field when "
"select 'Transpose Pivot' option"
)
)
)
if not metrics:
raise Exception(_("Please choose at least one metric"))
if any(v in groupby for v in columns) or any(v in columns for v in groupby):
raise Exception(_("Group By' and 'Columns' can't overlap"))
return d
def get_data(self, df):
if self.form_data.get("granularity") == "all" and DTTM_ALIAS in df:
del df[DTTM_ALIAS]
aggfunc = self.form_data.get("pandas_aggfunc") or "sum"
# Ensure that Pandas's sum function mimics that of SQL.
if aggfunc == "sum":
aggfunc = lambda x: x.sum(min_count=1)
groupby = self.form_data.get("groupby")
columns = self.form_data.get("columns")
if self.form_data.get("transpose_pivot"):
groupby, columns = columns, groupby
df = df.pivot_table(
index=groupby,
columns=columns,
values=[utils.get_metric_name(m) for m in self.form_data.get("metrics")],
aggfunc=aggfunc,
margins=self.form_data.get("pivot_margins"),
)
# Display metrics side by side with each column
if self.form_data.get("combine_metric"):
df = df.stack(0).unstack()
return dict(
columns=list(df.columns),
html=df.to_html(
na_rep="null",
classes=(
"dataframe table table-striped table-bordered "
"table-condensed table-hover"
).split(" "),
),
)
class MarkupViz(BaseViz):
"""Use html or markdown to create a free form widget"""
viz_type = "markup"
verbose_name = _("Markup")
is_timeseries = False
def query_obj(self):
return None
def get_df(
self, query_obj: Optional[Dict[str, Any]] = None
) -> Optional[pd.DataFrame]:
return None
def get_data(self, df):
markup_type = self.form_data.get("markup_type")
code = self.form_data.get("code", "")
if markup_type == "markdown":
code = markdown(code)
return dict(html=code, theme_css=get_css_manifest_files("theme"))
class SeparatorViz(MarkupViz):
"""Use to create section headers in a dashboard, similar to `Markup`"""
viz_type = "separator"
verbose_name = _("Separator")
class WordCloudViz(BaseViz):
"""Build a colorful word cloud
Uses the nice library at:
https://github.com/jasondavies/d3-cloud
"""
viz_type = "word_cloud"
verbose_name = _("Word Cloud")
is_timeseries = False
def query_obj(self):
d = super().query_obj()
d["groupby"] = [self.form_data.get("series")]
return d
class TreemapViz(BaseViz):
"""Tree map visualisation for hierarchical data."""
viz_type = "treemap"
verbose_name = _("Treemap")
credits = '<a href="https://d3js.org">d3.js</a>'
is_timeseries = False
def _nest(self, metric, df):
nlevels = df.index.nlevels
if nlevels == 1:
result = [{"name": n, "value": v} for n, v in zip(df.index, df[metric])]
else:
result = [
{"name": l, "children": self._nest(metric, df.loc[l])}
for l in df.index.levels[0]
]
return result
def get_data(self, df):
df = df.set_index(self.form_data.get("groupby"))
chart_data = [
{"name": metric, "children": self._nest(metric, df)}
for metric in df.columns
]
return chart_data
class CalHeatmapViz(BaseViz):
"""Calendar heatmap."""
viz_type = "cal_heatmap"
verbose_name = _("Calendar Heatmap")
credits = "<a href=https://github.com/wa0x6e/cal-heatmap>cal-heatmap</a>"
is_timeseries = True
def get_data(self, df):
form_data = self.form_data
data = {}
records = df.to_dict("records")
for metric in self.metric_labels:
values = {}
for obj in records:
v = obj[DTTM_ALIAS]
if hasattr(v, "value"):
v = v.value
values[str(v / 10 ** 9)] = obj.get(metric)
data[metric] = values
start, end = utils.get_since_until(
relative_start=relative_start,
relative_end=relative_end,
time_range=form_data.get("time_range"),
since=form_data.get("since"),
until=form_data.get("until"),
)
if not start or not end:
raise Exception("Please provide both time bounds (Since and Until)")
domain = form_data.get("domain_granularity")
diff_delta = rdelta.relativedelta(end, start)
diff_secs = (end - start).total_seconds()
if domain == "year":
range_ = diff_delta.years + 1
elif domain == "month":
range_ = diff_delta.years * 12 + diff_delta.months + 1
elif domain == "week":
range_ = diff_delta.years * 53 + diff_delta.weeks + 1
elif domain == "day":
range_ = diff_secs // (24 * 60 * 60) + 1
else:
range_ = diff_secs // (60 * 60) + 1
return {
"data": data,
"start": start,
"domain": domain,
"subdomain": form_data.get("subdomain_granularity"),
"range": range_,
}
def query_obj(self):
d = super().query_obj()
fd = self.form_data
d["metrics"] = fd.get("metrics")
return d
class NVD3Viz(BaseViz):
"""Base class for all nvd3 vizs"""
credits = '<a href="http://nvd3.org/">NVD3.org</a>'
viz_type: Optional[str] = None
verbose_name = "Base NVD3 Viz"
is_timeseries = False
class BoxPlotViz(NVD3Viz):
"""Box plot viz from ND3"""
viz_type = "box_plot"
verbose_name = _("Box Plot")
sort_series = False
is_timeseries = True
def to_series(self, df, classed="", title_suffix=""):
label_sep = " - "
chart_data = []
for index_value, row in zip(df.index, df.to_dict(orient="records")):
if isinstance(index_value, tuple):
index_value = label_sep.join(index_value)
boxes = defaultdict(dict)
for (label, key), value in row.items():
if key == "nanmedian":
key = "Q2"
boxes[label][key] = value
for label, box in boxes.items():
if len(self.form_data.get("metrics")) > 1:
# need to render data labels with metrics
chart_label = label_sep.join([index_value, label])
else:
chart_label = index_value
chart_data.append({"label": chart_label, "values": box})
return chart_data
def get_data(self, df):
form_data = self.form_data
# conform to NVD3 names
def Q1(series): # need to be named functions - can't use lambdas
return np.nanpercentile(series, 25)
def Q3(series):
return np.nanpercentile(series, 75)
whisker_type = form_data.get("whisker_options")
if whisker_type == "Tukey":
def whisker_high(series):
upper_outer_lim = Q3(series) + 1.5 * (Q3(series) - Q1(series))
return series[series <= upper_outer_lim].max()
def whisker_low(series):
lower_outer_lim = Q1(series) - 1.5 * (Q3(series) - Q1(series))
return series[series >= lower_outer_lim].min()
elif whisker_type == "Min/max (no outliers)":
def whisker_high(series):
return series.max()
def whisker_low(series):
return series.min()
elif " percentiles" in whisker_type:
low, high = whisker_type.replace(" percentiles", "").split("/")
def whisker_high(series):
return np.nanpercentile(series, int(high))
def whisker_low(series):
return np.nanpercentile(series, int(low))
else:
raise ValueError("Unknown whisker type: {}".format(whisker_type))
def outliers(series):
above = series[series > whisker_high(series)]
below = series[series < whisker_low(series)]
# pandas sometimes doesn't like getting lists back here
return set(above.tolist() + below.tolist())
aggregate = [Q1, np.nanmedian, Q3, whisker_high, whisker_low, outliers]
df = df.groupby(form_data.get("groupby")).agg(aggregate)
chart_data = self.to_series(df)
return chart_data
class BubbleViz(NVD3Viz):
"""Based on the NVD3 bubble chart"""
viz_type = "bubble"
verbose_name = _("Bubble Chart")
is_timeseries = False
def query_obj(self):
form_data = self.form_data
d = super().query_obj()
d["groupby"] = [form_data.get("entity")]
if form_data.get("series"):
d["groupby"].append(form_data.get("series"))
self.x_metric = form_data.get("x")
self.y_metric = form_data.get("y")
self.z_metric = form_data.get("size")
self.entity = form_data.get("entity")
self.series = form_data.get("series") or self.entity
d["row_limit"] = form_data.get("limit")
d["metrics"] = [self.z_metric, self.x_metric, self.y_metric]
if len(set(self.metric_labels)) < 3:
raise Exception(_("Please use 3 different metric labels"))
if not all(d["metrics"] + [self.entity]):
raise Exception(_("Pick a metric for x, y and size"))
return d
def get_data(self, df):
df["x"] = df[[utils.get_metric_name(self.x_metric)]]
df["y"] = df[[utils.get_metric_name(self.y_metric)]]
df["size"] = df[[utils.get_metric_name(self.z_metric)]]
df["shape"] = "circle"
df["group"] = df[[self.series]]
series = defaultdict(list)
for row in df.to_dict(orient="records"):
series[row["group"]].append(row)
chart_data = []
for k, v in series.items():
chart_data.append({"key": k, "values": v})
return chart_data
class BulletViz(NVD3Viz):