diff --git a/cpp/cmake_modules/ThirdpartyToolchain.cmake b/cpp/cmake_modules/ThirdpartyToolchain.cmake
index 35ad4089e7f91..3188c4cc7b96f 100644
--- a/cpp/cmake_modules/ThirdpartyToolchain.cmake
+++ b/cpp/cmake_modules/ThirdpartyToolchain.cmake
@@ -2061,10 +2061,13 @@ macro(build_substrait)
 
     # Missing dll-interface:
     list(APPEND SUBSTRAIT_SUPPRESSED_FLAGS "/wd4251")
-  elseif(CMAKE_CXX_COMPILER_ID STREQUAL "AppleClang" OR CMAKE_CXX_COMPILER_ID STREQUAL
-                                                        "Clang")
-    # Protobuf generated files trigger some errors on CLANG TSAN builds
-    list(APPEND SUBSTRAIT_SUPPRESSED_FLAGS "-Wno-error=shorten-64-to-32")
+  else()
+    list(APPEND SUBSTRAIT_SUPPRESSED_FLAGS "-Wno-deprecated")
+    if(CMAKE_CXX_COMPILER_ID STREQUAL "AppleClang" OR CMAKE_CXX_COMPILER_ID STREQUAL
+                                                      "Clang")
+      # Protobuf generated files trigger some errors on CLANG TSAN builds
+      list(APPEND SUBSTRAIT_SUPPRESSED_FLAGS "-Wno-error=shorten-64-to-32")
+    endif()
   endif()
 
   set(SUBSTRAIT_SOURCES)