KubernetesExecutor: All task pods are terminating with error while task succeed #16020

andormarkus · 2021-05-24T10:53:50Z

Apache Airflow version: 2.0.2+
Kubernetes version: 1.20
Helm chart version: 1.0.0

What happened:
Successful task pods are terminating with error.

I have did further testing with different versions the see below my test results:

2.0.1-python3.8 - OK
2.0.2-python3.6 - NOK (helm chart default image)
2.0.2-python3.8 - NOK
2.1.0-python3.8 - NOK

▶ kubectl -n airflow get pods

NAME                                              READY   STATUS      RESTARTS   AGE
airflow-s3-sync-1621853400-x8hzv                  0/1     Completed   0          11s
airflow-scheduler-865c754f55-6fdkt                2/2     Running     0          5m45s
airflow-scheduler-865c754f55-hqbv2                2/2     Running     0          5m45s
airflow-scheduler-865c754f55-hw65l                2/2     Running     0          5m45s
airflow-statsd-84f4f9898-r9xxm                    1/1     Running     0          5m45s
airflow-webserver-7c66d4cd99-28jxv                1/1     Running     0          5m45s
airflow-webserver-7c66d4cd99-d8wrf                1/1     Running     0          5m45s
airflow-webserver-7c66d4cd99-xn2hq                1/1     Running     0          5m45s
simpledagsleep.4862fcd4ec8c4adfb10e421feee88745   0/1     Error       0          2m25s

▶ kubectl -n airflow logs simpledagsleep.4862fcd4ec8c4adfb10e421feee88745

BACKEND=postgresql
DB_HOST=XXXXXXXXXXXXXXXXXXXXXXXX
DB_PORT=5432

[2021-05-24 10:47:57,843] {dagbag.py:451} INFO - Filling up the DagBag from /opt/airflow/dags/simple_dag.py
[2021-05-24 10:47:58,147] {base_aws.py:368} INFO - Airflow Connection: aws_conn_id=aws_default
[2021-05-24 10:47:58,780] {base_aws.py:391} WARNING - Unable to use Airflow Connection for credentials.
[2021-05-24 10:47:58,780] {base_aws.py:392} INFO - Fallback on boto3 credential strategy
[2021-05-24 10:47:58,781] {base_aws.py:395} INFO - Creating session using boto3 credential strategy region_name=eu-central-1
Running <TaskInstance: simple_dag.sleep 2021-05-24T10:47:46.486143+00:00 [queued]> on host simpledagsleep.4862fcd4ec8c4adfb10e421feee88745
Traceback (most recent call last):
  File "/home/airflow/.local/bin/airflow", line 8, in <module>
    sys.exit(main())
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/__main__.py", line 40, in main
    args.func(args)
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/cli/cli_parser.py", line 48, in command
    return func(*args, **kwargs)
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/utils/cli.py", line 89, in wrapper
    return f(*args, **kwargs)
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/cli/commands/task_command.py", line 235, in task_run
    _run_task_by_selected_method(args, dag, ti)
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/cli/commands/task_command.py", line 64, in _run_task_by_selected_method
    _run_task_by_local_task_job(args, ti)
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/cli/commands/task_command.py", line 120, in _run_task_by_local_task_job
    run_job.run()
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/jobs/base_job.py", line 237, in run
    self._execute()
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/jobs/local_task_job.py", line 142, in _execute
    self.on_kill()
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/jobs/local_task_job.py", line 157, in on_kill
    self.task_runner.on_finish()
  File "/home/airflow/.local/lib/python3.8/site-packages/airflow/task/task_runner/base_task_runner.py", line 178, in on_finish
    self._error_file.close()
  File "/usr/local/lib/python3.8/tempfile.py", line 499, in close
    self._closer.close()
  File "/usr/local/lib/python3.8/tempfile.py", line 436, in close
    unlink(self.name)
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpt63agqia'

How to reproduce it:

simple_dag.py

import time

from airflow import DAG
from airflow.operators.python import PythonOperator
from datetime import datetime, timedelta

default_args = {
    "owner"           : "airflow",
    "depends_on_past" : False,
    "start_date"      : datetime(2020, 1, 1),
    "email"           : ["[email protected]"],
    "email_on_failure": False,
    "email_on_retry"  : False,
    "retries"         : 1,
    "retry_delay"     : timedelta(minutes=5)
}


def sleep():
    time.sleep(60)
    return True


with DAG("simple_dag", default_args=default_args, schedule_interval="@once", catchup=False) as dag:
    t1 = PythonOperator(task_id="sleep", python_callable=sleep)

myconf.yaml

executor: KubernetesExecutor
fernetKey: "XXXXXXXXXX"

defaultAirflowTag: "2.0.2-python3.8"
airflowVersion: "2.0.2"


config:
  logging:
    colored_console_log: "True"
    remote_logging: "True"
    remote_base_log_folder: "cloudwatch://${log_group_arn}"
    remote_log_conn_id: "aws_default"
  core:
    load_examples: "False"
    store_dag_code: "True"
    parallelism: "1000"
    dag_concurrency: "1000"
    max_active_runs_per_dag: "1000"
    non_pooled_task_slot_count: "1000"
  scheduler:
    job_heartbeat_sec: 5
    scheduler_heartbeat_sec: 5
    parsing_processes: 2
  webserver:
    base_url: "http://${web_url}/airflow"
  secrets:
    backend: "airflow.contrib.secrets.aws_systems_manager.SystemsManagerParameterStoreBackend"
    backend_kwargs: XXXXXXXXXX

webserver:
  replicas: 3
  nodeSelector:
    namespace: airflow
  serviceAccount:
    name: ${service_account_name}
    annotations:
      eks.amazonaws.com/role-arn: ${service_account_iamrole_arn}
  service:
    type: NodePort
ingress:
  enabled: true
  web:
    precedingPaths:
      - path: "/*"
        serviceName: "ssl-redirect"
        servicePort: "use-annotation"
    path: "/airflow/*"
    annotations:
      external-dns.alpha.kubernetes.io/hostname: ${web_url}
      kubernetes.io/ingress.class: alb
      alb.ingress.kubernetes.io/scheme: internal
      alb.ingress.kubernetes.io/target-type: ip
      alb.ingress.kubernetes.io/target-group-attributes: stickiness.enabled=true,stickiness.lb_cookie.duration_seconds=3600
      alb.ingress.kubernetes.io/certificate-arn: ${aws_acm_certificate_arn}
      alb.ingress.kubernetes.io/listen-ports: '[{"HTTP": 80}, {"HTTPS":443}]'
      alb.ingress.kubernetes.io/actions.ssl-redirect: '{"Type": "redirect", "RedirectConfig": { "Protocol": "HTTPS", "Port": "443", "StatusCode": "HTTP_301"}}'
scheduler:
  replicas: 3
  nodeSelector:
    namespace: airflow
  serviceAccount:
    name: ${service_account_name}
    annotations:
      eks.amazonaws.com/role-arn: ${service_account_iamrole_arn}
workers:
  serviceAccount:
    name: ${service_account_name}
    annotations:
      eks.amazonaws.com/role-arn: ${service_account_iamrole_arn}
dags:
  persistence:
    enabled: true
    storageClassName: ${storage_class_dags}
logs:
  persistence:
    enabled: true
    storageClassName: ${storage_class_logs}
postgresql:
  enabled: false
data:
  metadataSecretName: ${metadata_secret_name}

kaxil · 2021-05-24T18:23:27Z

cc @ephraimbuddy @Dr-Denzy If you'll can pair up and take a look when you have time. See if you can reproduce it

ephraimbuddy · 2021-05-24T21:14:45Z

cc @ephraimbuddy @Dr-Denzy If you'll can pair up and take a look when you have time. See if you can reproduce it

Cool. @Dr-Denzy let's try this tomorrow

cccs-cat001 · 2021-06-17T14:54:04Z

Hi we're experiencing this issue as well on 2.0.2 and 2.1.0, is there any updates on a potential fix? It's sort of blocking us from upgrading to the latest versions.

ephraimbuddy · 2021-06-17T14:56:56Z

Hi we're experiencing this issue as well on 2.0.2 and 2.1.0, is there any updates on a potential fix? It's sort of blocking us from upgrading to the latest versions.

Please share your log messages

cccs-cat001 · 2021-06-28T14:05:28Z

@ephraimbuddy Here's the logs (sorry I'm a little late!)

Traceback (most recent call last):
  File "/opt/conda/bin/airflow", line 8, in <module>
    sys.exit(main())
  File "/opt/conda/lib/python3.8/site-packages/airflow/__main__.py", line 40, in main
    args.func(args)
  File "/opt/conda/lib/python3.8/site-packages/airflow/cli/cli_parser.py", line 48, in command
    return func(*args, **kwargs)
  File "/opt/conda/lib/python3.8/site-packages/airflow/utils/cli.py", line 91, in wrapper
    return f(*args, **kwargs)
  File "/opt/conda/lib/python3.8/site-packages/airflow/cli/commands/task_command.py", line 237, in task_run
    _run_task_by_selected_method(args, dag, ti)
  File "/opt/conda/lib/python3.8/site-packages/airflow/cli/commands/task_command.py", line 64, in _run_task_by_selected_method
    _run_task_by_local_task_job(args, ti)
  File "/opt/conda/lib/python3.8/site-packages/airflow/cli/commands/task_command.py", line 120, in _run_task_by_local_task_job
    run_job.run()
  File "/opt/conda/lib/python3.8/site-packages/airflow/jobs/base_job.py", line 237, in run
    self._execute()
  File "/opt/conda/lib/python3.8/site-packages/airflow/jobs/local_task_job.py", line 102, in _execute
    self.task_runner.start()
  File "/opt/conda/lib/python3.8/site-packages/airflow/task/task_runner/standard_task_runner.py", line 41, in start
    self.process = self._start_by_fork()
  File "/opt/conda/lib/python3.8/site-packages/airflow/task/task_runner/standard_task_runner.py", line 92, in _start_by_fork
    logging.shutdown()
  File "/opt/conda/lib/python3.8/logging/__init__.py", line 2127, in shutdown
    h.close()
  File "/opt/conda/lib/python3.8/logging/__init__.py", line 1163, in close
    stream.close()
  File "/opt/conda/lib/python3.8/site-packages/airflow/models/taskinstance.py", line 1266, in signal_handler
    raise AirflowException("Task received SIGTERM signal")
airflow.exceptions.AirflowException: Task received SIGTERM signal
Running <TaskInstance: demo_git_notebook_parameterized.demo_git_notebook_parameterized 2021-06-28T14:00:08.688806+00:00 [queued]> on host demogitnotebookparameterizeddemogitnotebookparameterized.b1a282
Traceback (most recent call last):
  File "/opt/conda/bin/airflow", line 8, in <module>
    sys.exit(main())
  File "/opt/conda/lib/python3.8/site-packages/airflow/__main__.py", line 40, in main
    args.func(args)
  File "/opt/conda/lib/python3.8/site-packages/airflow/cli/cli_parser.py", line 48, in command
    return func(*args, **kwargs)
  File "/opt/conda/lib/python3.8/site-packages/airflow/utils/cli.py", line 91, in wrapper
    return f(*args, **kwargs)
  File "/opt/conda/lib/python3.8/site-packages/airflow/cli/commands/task_command.py", line 237, in task_run
    _run_task_by_selected_method(args, dag, ti)
  File "/opt/conda/lib/python3.8/site-packages/airflow/cli/commands/task_command.py", line 64, in _run_task_by_selected_method
    _run_task_by_local_task_job(args, ti)
  File "/opt/conda/lib/python3.8/site-packages/airflow/cli/commands/task_command.py", line 120, in _run_task_by_local_task_job
    run_job.run()
  File "/opt/conda/lib/python3.8/site-packages/airflow/jobs/base_job.py", line 237, in run
    self._execute()
  File "/opt/conda/lib/python3.8/site-packages/airflow/jobs/local_task_job.py", line 147, in _execute
    self.on_kill()
  File "/opt/conda/lib/python3.8/site-packages/airflow/jobs/local_task_job.py", line 166, in on_kill
    self.task_runner.on_finish()
  File "/opt/conda/lib/python3.8/site-packages/airflow/task/task_runner/base_task_runner.py", line 179, in on_finish
    self._error_file.close()
  File "/opt/conda/lib/python3.8/tempfile.py", line 499, in close
    self._closer.close()
  File "/opt/conda/lib/python3.8/tempfile.py", line 436, in close
    unlink(self.name)
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpcrf6qxnn'

ephraimbuddy · 2021-06-28T20:15:25Z

Can you check if it still happens in main? I'm thinking it's related to #16227

trucnguyenlam · 2021-07-16T07:34:19Z

@ephraimbuddy how is it going with the issue, we are also experiencing this on version 2.1.1

ephraimbuddy · 2021-07-18T08:18:41Z

@ephraimbuddy how is it going with the issue, we are also experiencing this on version 2.1.1

I believe this issue was fixed in #16289 and will be available in 2.1.3,
For the meantime, set this environment variable: AIRFLOW__SCHEDULER__SCHEDULE_AFTER_TASK_EXECUTION=False

ephraimbuddy · 2021-09-15T12:34:24Z

Still happens. It will be fixed by #18269

deveshbajaj59 · 2021-09-24T07:38:51Z

@ephraimbuddy Any update on this issue, the issue seems to be still persists in the airflow 2.1.4 . I am specifically getting this error when I am passing the pod template

ephraimbuddy · 2021-09-24T14:12:55Z

@ephraimbuddy Any update on this issue, the issue seems to be still persists in the airflow 2.1.4 . I am specifically getting this error when I am passing the pod template

It'll be out in 2.2.0

kaxil · 2021-12-30T01:36:50Z

Closing since 2.2.0 is out but can open if you are facing same issue

andormarkus added the kind:bug This is a clearly a bug label May 24, 2021

This was referenced May 24, 2021

Helm chart: All task pods are terminating with error while task succeed #16016

Closed

CLI 'kubernetes cleanup-pods' fails on invalid label key #16013

Closed

Helm chart: How to enable HTTPS connection #16010

Closed

kaxil added the provider:cncf-kubernetes Kubernetes provider related issues label May 24, 2021

ephraimbuddy mentioned this issue Sep 15, 2021

Use try/except when closing temporary file in task_runner #18269

Merged

kaxil closed this as completed Dec 30, 2021

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KubernetesExecutor: All task pods are terminating with error while task succeed #16020

KubernetesExecutor: All task pods are terminating with error while task succeed #16020

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KubernetesExecutor: All task pods are terminating with error while task succeed #16020

KubernetesExecutor: All task pods are terminating with error while task succeed #16020

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