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how to do bining using assembly #15

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FengqingWang0712 opened this issue Jul 18, 2024 · 2 comments
Open

how to do bining using assembly #15

FengqingWang0712 opened this issue Jul 18, 2024 · 2 comments

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@FengqingWang0712
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Hello there :)
As far as my understanding, MetaBCC-LR generates bins without assembly. In the paper, you mentioned that you compared the effect of MetaBCC-LR on metagenomics assembly. I wonder how you did this. Is it give assembly here: -r assembly.fasta?
Thank you in advance for your reply!
@anuradhawick
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Hi. I did this step manually by separating reads, followed by assembly.

@anuradhawick
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A helper script is here in the repo named reads2bins.py

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@anuradhawick @FengqingWang0712