Unweighted_Graph_tool_to_ERODE.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {
    "tags": []
   },
   "source": [
    "# Credits\n",
    "__This notebook has been adapted from__\n",
    "- https://git.skewed.de/count0/graph-tool/-/wikis/installation-instructions#googles-colaboratory"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "kDn_lVxg3Z2G"
   },
   "source": [
    "# Installing graph-tool (https://graph-tool.skewed.de)\n",
    "\n",
    "---\n",
    "\n",
    "\n",
    "To import a library that's not in Colaboratory by default, you can use `!apt-get install`.\n",
    "\n",
    "But since graph-tool is not in the official repository, we need to add it to the list."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/"
    },
    "id": "GQ18Kd5F3uKe",
    "outputId": "379c8deb-7a09-4d45-cfc9-afc1e694dfdc"
   },
   "outputs": [],
   "source": [
    "!echo \"deb http://downloads.skewed.de/apt bionic main\" >> /etc/apt/sources.list\n",
    "!apt-key adv --keyserver keyserver.ubuntu.com --recv-key 612DEFB798507F25\n",
    "!apt-get update\n",
    "!apt-get install python3-graph-tool python3-matplotlib python3-cairo"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/"
    },
    "id": "pr-ut3scRrok",
    "outputId": "650030c1-9b2a-49cb-871a-42cbf2ec9de9"
   },
   "outputs": [],
   "source": [
    "#python3-cairo from Ubuntu's reposity is linked with a different python version; we need to improvise\n",
    "!apt purge python3-cairo\n",
    "!apt install libcairo2-dev pkg-config python3-dev\n",
    "!pip install --force-reinstall pycairo\n",
    "!pip install zstandard"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "id": "LZBU2HvQqJAw"
   },
   "source": [
    "# Repository of unweighted graphs: https://networks.skewed.de/?tags=Unweighted"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/"
    },
    "id": "-Hk9usv9pUBZ",
    "outputId": "cbc1290b-66b6-401f-9869-4269699e3add"
   },
   "outputs": [
    {
     "ename": "ModuleNotFoundError",
     "evalue": "No module named 'pandas'",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mModuleNotFoundError\u001b[0m                       Traceback (most recent call last)",
      "Input \u001b[0;32mIn [1]\u001b[0m, in \u001b[0;36m<cell line: 2>\u001b[0;34m()\u001b[0m\n\u001b[1;32m      1\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mnumpy\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m \u001b[38;5;21;01mnp\u001b[39;00m\n\u001b[0;32m----> 2\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mpandas\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m \u001b[38;5;21;01mpd\u001b[39;00m\n\u001b[1;32m      3\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mgraph_tool\u001b[39;00m\u001b[38;5;21;01m.\u001b[39;00m\u001b[38;5;21;01mall\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m \u001b[38;5;21;01mgt\u001b[39;00m\n\u001b[1;32m      4\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mgoogle\u001b[39;00m\u001b[38;5;21;01m.\u001b[39;00m\u001b[38;5;21;01mcolab\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m files\n",
      "\u001b[0;31mModuleNotFoundError\u001b[0m: No module named 'pandas'"
     ]
    }
   ],
   "source": [
    "import numpy as np\n",
    "import pandas as pd\n",
    "import graph_tool.all as gt\n",
    "from google.colab import files\n",
    "\n",
    "from google.colab import drive\n",
    "\n",
    "import os.path\n",
    "from os import path\n",
    "\n",
    "def export_all_unweightedGraphs_erodeCSV(model_names,download_file,store_on_gdrive,path_g_drive=\"unweightedGraphs/\",prefix_to_weight=dict()):\n",
    "   #Exports in ERODE CSV format all weighted graphs in the list model_names. \n",
    "   #The CSV file is either stored on google drive, or downloaded, as required by the parameters (Google drive has precedence on downloading)\n",
    "   #If the google drive option is chosen, the files will be stored in folder weightedGraphs, or different paths provided in parameter path_g_drive\n",
    "   #  This should be a relative path to a folder (ending with a slash). E.g., if you pass \"weightedGraphs/\", we will store files in it in MyDrive/weightedGraphs/\n",
    "\n",
    "\n",
    "  print('Processing and exporting models')\n",
    "  print(\"\",model_names)\n",
    "\n",
    "  #Prepare gdrive\n",
    "  gdrive_path=\"/content/drive/MyDrive/\"+path_g_drive\n",
    "  if store_on_gdrive:\n",
    "    drive.mount('/content/drive')\n",
    "    if not path.exists(gdrive_path):\n",
    "      os.mkdir(gdrive_path)\n",
    "    if not path.exists(gdrive_path+\"/csv/\"):\n",
    "      os.mkdir(gdrive_path+\"/csv/\")\n",
    "\n",
    "  #Export required weighted graps\n",
    "  for model_name in model_names:\n",
    "    weight_name='weight'\n",
    "    #for key in prefix_to_weight:\n",
    "    #  if model_name.startswith(key):\n",
    "    #    weight_name=prefix_to_weight[key]\n",
    "    #    break\n",
    "    export_unweightedGraph_erodeCSV(model_name,download_file,store_on_gdrive,gdrive_path,weight_name)\n",
    "\n",
    "  #Close gdrive\n",
    "  if store_on_gdrive:\n",
    "    drive.flush_and_unmount()\n",
    "\n",
    "  print('All computations completed')\n",
    "\n",
    "def export_unweightedGraph_erodeCSV(model_name,download_file,store_on_gdrive,gdrive_path,weight_name):\n",
    "  #load model\n",
    "  print(\"PROCESSING:\",model_name,\"...\")\n",
    "\n",
    "  g = gt.collection.ns[model_name]\n",
    "\n",
    "  #if not(weight_name in g.edge_properties):\n",
    "  #  print(\" MODEL DROPPED BECAUSE NOT WEIGHTED\")\n",
    "  #  return\n",
    "  add_rev= not g.is_directed()\n",
    "    \n",
    "  max_nodes=200\n",
    "  n_nodes=g.num_vertices()\n",
    "  if n_nodes > max_nodes:\n",
    "    print(\" MODEL DROPPED BECAUSE IT HAS MORE THAN\",max_nodes,\"NODES\")\n",
    "    return        \n",
    "    \n",
    "  #n_nodes=len(g.get_edges())\n",
    "  #if add_rev:\n",
    "  #      n_edges=n_edges*2\n",
    "  #if n_edges > max_edges:\n",
    "  #  print(\" MODEL DROPPED BECAUSE IT HAS MORE THAN\",max_edges,\"EDGES\")\n",
    "  #  return        \n",
    "\n",
    "  model_name = model_name.replace(\"/\",\"_\")\n",
    "  model_name = model_name.replace(\" \",\"_\")\n",
    "  model_name = model_name.replace(\"-\",\"_\")\n",
    "  model_name = model_name.replace(\"(\",\"_\")\n",
    "  model_name = model_name.replace(\")\",\"_\")\n",
    "\n",
    "  #store unweighted edges in a dataframe, and add weights (1)\n",
    "  df = pd.DataFrame(data=g.get_edges(), columns=[\"source\", \"target\"])\n",
    "  df[\"source\"]=df[\"source\"]+1\n",
    "  df[\"target\"]=df[\"target\"]+1\n",
    "  \n",
    "  df['weight']=np.ones(len(df))\n",
    "  #print(\"BEWARE:\",model_name,\"DOES NOT HAVE WEIGHTS.\\n WE SET ALL WEIGHTS TO ONE!\")\n",
    "  model_name=model_name+\"_defaultWeights\"\n",
    "\n",
    "\n",
    "  #add_rev_str= str(add_rev)\n",
    "  if add_rev:\n",
    "      df_rev = df[[\"target\",\"source\",'weight']]\n",
    "      df_rev.columns = [\"source\", \"target\",'weight']\n",
    "      df=pd.concat([df,df_rev])\n",
    "      df.reset_index(drop=True, inplace=True)\n",
    "      add_rev=False\n",
    "      \n",
    "\n",
    "  #n_nodes=g.num_vertices()\n",
    "  df0 = pd.DataFrame([[n_nodes,n_nodes,n_nodes]], columns=[\"source\", \"target\",'weight'])\n",
    "  df=pd.concat([df0, df])\n",
    "  df.reset_index(drop=True, inplace=True)\n",
    "  #print(df)\n",
    "\n",
    "  dfB = pd.DataFrame(data=np.zeros(n_nodes), columns=[\"B\"])\n",
    "\n",
    "    \n",
    "  #compute file name of csv file\n",
    "  csv_file_name=\"csv/\"+model_name+'A.csv'\n",
    "  csv_file_nameB=\"csv/\"+model_name+'B.csv'\n",
    "  erode_file_name=\"import_\"+model_name+'.ode'\n",
    "    \n",
    "  if store_on_gdrive:\n",
    "    csv_file_name  =gdrive_path+\"csv/\"+model_name+'A.csv'\n",
    "    csv_file_nameB =gdrive_path+\"csv/\"+model_name+'B.csv'\n",
    "    erode_file_name=gdrive_path+\"import_\"+model_name+'.ode'\n",
    "    \n",
    "  \n",
    "\n",
    "  print(\"  \",\"Graph processed, and data structure created\")\n",
    "\n",
    "  #create csv file and download if required\n",
    "  df.to_csv( csv_file_name ,index=False,header=False)\n",
    "  dfB.to_csv(csv_file_nameB,index=False,header=False)\n",
    "\n",
    "  # Create ERODE file to import the CSV ones\n",
    "  with open(erode_file_name, 'w') as fp:\n",
    "    fp.write('begin model import_'+model_name+\"\\n\")\n",
    "    fp.write(' importAffineSystem(fileIn=\"csv/'+model_name+'A.csv\", BFile=\"csv/'+model_name+'B.csv\", ICFile=\"csv/'+model_name+'B.csv\", addReverseEdges=false)\\n')\n",
    "    #fp.write(' write(fileOut=\"ODE/'+model_name+'._ode\",format=ODE)\\n')\n",
    "    #fp.write(' reduceBE(reducedFile=\"BE/'+model_name+'_BE._ode\", csvFile=\"BE.csv\")\\n')\n",
    "    #fp.write(' reduceFE(reducedFile=\"FE/'+model_name+'_FE._ode\", csvFile=\"FE.csv\")\\n')\n",
    "    fp.write(' write(fileOut=\"EULER_ODE/'+model_name+'.ode\",format=EULER)\\n')\n",
    "    #fp.write(' reduceRndFME(aggregationFunction=TIMES,reducedFile=\"RndFME_user/'+model_name+'_RndFME_user._ode\", csvFile=\"RndTIMES_USER.csv,prePartition=USER\")\\n')\n",
    "    fp.write('end model\\n')\n",
    "    \n",
    "  \n",
    "  if download_file and not store_on_gdrive:\n",
    "    files.download(csv_file_name)\n",
    "    files.download(csv_file_nameB)\n",
    "    files.download(erode_file_name)\n",
    "\n",
    "  print(\"  \",\"All files exported\")\n",
    "\n",
    "    \n",
    "  \n",
    "#Choose the models to consider\n",
    "# Just https://networks.skewed.de/net/blumenau_drug\n",
    "#model_names=[\"blumenau_drug\"]\n",
    "#model_names=[\"cattle\"]\n",
    "#model_names=[\"blumenau_drug\",\"cattle\",\"train_terrorists\"]\n",
    "\n",
    "#All unweighted networks on 21/07/2022 from smallest number of nodes to largest#\n",
    "# Taken from https://networks.skewed.de/?tags=Unweighted after clicking on 'Nodes'\n",
    "model_names=[\n",
    "    # 'sa_companies',\n",
    "    # #\"florentine_families\", does not work\n",
    "    # 'high_tech_company','moreno_taro','november17',\n",
    "    # 'sp_baboons/observational','sp_baboons/sensor',\n",
    "    # 'dutch_school/klas12b-net-1','dutch_school/klas12b-net-2','dutch_school/klas12b-net-3','dutch_school/klas12b-net-3m','dutch_school/klas12b-net-4','dutch_school/klas12b-net-4m','dutch_school/klas12b-primary',\n",
    "    # 'zebras','7th_graders','karate/77','karate/78','dutch_criticism','montreal','ceo_club','elite',\n",
    "    # 'macaque_neural','sp_kenyan_households','contiguous_usa','cs_department','dolphins','terrorists_911',\n",
    "    # 'law_firm','sp_hospital','reality_mining','swingers','polbooks','adjnoun',\n",
    "    # 'fresh_webs/AkatoreA','fresh_webs/AkatoreB','fresh_webs/Berwick','fresh_webs/Blackrock','fresh_webs/Broad','fresh_webs/Canton','fresh_webs/Catlins','fresh_webs/Coweeta1','fresh_webs/Coweeta17','fresh_webs/DempstersAu','fresh_webs/DempstersSp','fresh_webs/DempstersSu','fresh_webs/German','fresh_webs/Healy','fresh_webs/Kyeburn','fresh_webs/LilKyeburn','fresh_webs/Martins','fresh_webs/Narrowdale','fresh_webs/NorthCol','fresh_webs/Powder','fresh_webs/Stony','fresh_webs/SuttonAu','fresh_webs/SuttonSp','fresh_webs/SuttonSu','fresh_webs/Troy','fresh_webs/Venlaw',\n",
    "    # 'sp_hypertext/contacts','sp_hypertext/intervals',\n",
    "    # 'football','football_tsevans','revolution','email_company',\n",
    "    # 'sp_high_school_new/2011','sp_high_school_new/2012',\n",
    "    # 'foodweb_little_rock','student_cooperation','jazz_collab','interactome_pdz','physician_trust','contact',\n",
    "    # 'malaria_genes/HVR_1','malaria_genes/HVR_2','malaria_genes/HVR_3','malaria_genes/HVR_4','malaria_genes/HVR_5','malaria_genes/HVR_6','malaria_genes/HVR_7','malaria_genes/HVR_8','malaria_genes/HVR_9','malaria_genes/combined',\n",
    "    # 'sp_high_school/proximity','sp_high_school/diaries','sp_high_school/survey','sp_high_school/facebook',\n",
    "    # 'marvel_partnerships','kidnappings','facebook_friends',\n",
    "    # 'ugandan_village/friendship-1','ugandan_village/friendship-2','ugandan_village/friendship-3','ugandan_village/friendship-4','ugandan_village/friendship-5','ugandan_village/friendship-6','ugandan_village/friendship-7','ugandan_village/friendship-8','ugandan_village/friendship-9','ugandan_village/friendship-10','ugandan_village/friendship-11','ugandan_village/friendship-12','ugandan_village/friendship-13','ugandan_village/friendship-14','ugandan_village/friendship-15','ugandan_village/friendship-16','ugandan_village/friendship-17','ugandan_village/health-advice_1','ugandan_village/health-advice_2','ugandan_village/health-advice_3','ugandan_village/health-advice_4','ugandan_village/health-advice_5','ugandan_village/health-advice_6','ugandan_village/health-advice_7','ugandan_village/health-advice_8','ugandan_village/health-advice_9','ugandan_village/health-advice_10','ugandan_village/health-advice_11','ugandan_village/health-advice_12','ugandan_village/health-advice_13','ugandan_village/health-advice_14','ugandan_village/health-advice_15','ugandan_village/health-advice_16','ugandan_village/health-advice_17',\n",
    "    # 'sp_colocation/Thiers13','sp_colocation/SFHH','sp_colocation/LyonSchool','sp_colocation/LH10','sp_colocation/InVS15','sp_colocation/InVS13',\n",
    "    # 'ecoli_transcription/v1.0','ecoli_transcription/v1.1',\n",
    "    # 'eu_airlines','celegans_metabolic','wiki_science',\n",
    "    # 'internet_top_pop/Aarnet','internet_top_pop/Abilene','internet_top_pop/Abvt','internet_top_pop/Aconet','internet_top_pop/Agis','internet_top_pop/Ai3','internet_top_pop/Airtel','internet_top_pop/Amres','internet_top_pop/Ans','internet_top_pop/Arn','internet_top_pop/Arnes','internet_top_pop/Arpanet196912','internet_top_pop/Arpanet19706','internet_top_pop/Arpanet19719','internet_top_pop/Arpanet19723','internet_top_pop/Arpanet19728','internet_top_pop/AsnetAm','internet_top_pop/Atmnet','internet_top_pop/AttMpls','internet_top_pop/Azrena','internet_top_pop/Bandcon','internet_top_pop/Basnet','internet_top_pop/Bbnplanet','internet_top_pop/Bellcanada','internet_top_pop/Bellsouth','internet_top_pop/Belnet2003','internet_top_pop/Belnet2004','internet_top_pop/Belnet2005','internet_top_pop/Belnet2006','internet_top_pop/Belnet2007','internet_top_pop/Belnet2008','internet_top_pop/Belnet2009','internet_top_pop/Belnet2010','internet_top_pop/BeyondTheNetwork','internet_top_pop/Bics','internet_top_pop/Biznet','internet_top_pop/Bren','internet_top_pop/BsonetEurope','internet_top_pop/BtAsiaPac','internet_top_pop/BtEurope','internet_top_pop/BtLatinAmerica','internet_top_pop/BtNorthAmerica','internet_top_pop/Canerie','internet_top_pop/Carnet','internet_top_pop/Cernet','internet_top_pop/Cesnet1993','internet_top_pop/Cesnet1997','internet_top_pop/Cesnet1999','internet_top_pop/Cesnet2001','internet_top_pop/Cesnet200304','internet_top_pop/Cesnet200511','internet_top_pop/Cesnet200603','internet_top_pop/Cesnet200706','internet_top_pop/Cesnet201006','internet_top_pop/Chinanet','internet_top_pop/Claranet','internet_top_pop/Cogentco','internet_top_pop/Colt','internet_top_pop/Columbus','internet_top_pop/Compuserve','internet_top_pop/CrlNetworkServices','internet_top_pop/Cudi','internet_top_pop/Cwix','internet_top_pop/Cynet','internet_top_pop/Darkstrand','internet_top_pop/Dataxchange','internet_top_pop/Deltacom','internet_top_pop/DeutscheTelekom','internet_top_pop/Dfn','internet_top_pop/DialtelecomCz','internet_top_pop/Digex','internet_top_pop/Easynet','internet_top_pop/Eenet','internet_top_pop/EliBackbone','internet_top_pop/Epoch','internet_top_pop/Ernet','internet_top_pop/Esnet','internet_top_pop/Eunetworks','internet_top_pop/Evolink','internet_top_pop/Fatman','internet_top_pop/Fccn','internet_top_pop/Forthnet','internet_top_pop/Funet','internet_top_pop/Gambia','internet_top_pop/Garr199901','internet_top_pop/Garr199904','internet_top_pop/Garr199905','internet_top_pop/Garr200109','internet_top_pop/Garr200112','internet_top_pop/Garr200212','internet_top_pop/Garr200404','internet_top_pop/Garr200902','internet_top_pop/Garr200908','internet_top_pop/Garr200909','internet_top_pop/Garr200912','internet_top_pop/Garr201001','internet_top_pop/Garr201003','internet_top_pop/Garr201004','internet_top_pop/Garr201005','internet_top_pop/Garr201007','internet_top_pop/Garr201008','internet_top_pop/Garr201010','internet_top_pop/Garr201012','internet_top_pop/Garr201101','internet_top_pop/Garr201102','internet_top_pop/Garr201103','internet_top_pop/Garr201104','internet_top_pop/Garr201105','internet_top_pop/Garr201107','internet_top_pop/Garr201108','internet_top_pop/Garr201109','internet_top_pop/Garr201110','internet_top_pop/Garr201111','internet_top_pop/Garr201112','internet_top_pop/Garr201201','internet_top_pop/Gblnet','internet_top_pop/Geant2001','internet_top_pop/Geant2009','internet_top_pop/Geant2010','internet_top_pop/Geant2012','internet_top_pop/Getnet','internet_top_pop/Globalcenter','internet_top_pop/Globenet','internet_top_pop/Goodnet','internet_top_pop/Grena','internet_top_pop/Gridnet','internet_top_pop/Grnet','internet_top_pop/GtsCe','internet_top_pop/GtsCzechRepublic','internet_top_pop/GtsHungary','internet_top_pop/GtsPoland','internet_top_pop/GtsRomania','internet_top_pop/GtsSlovakia','internet_top_pop/Harnet','internet_top_pop/Heanet','internet_top_pop/HiberniaCanada','internet_top_pop/HiberniaGlobal','internet_top_pop/HiberniaIreland','internet_top_pop/HiberniaNireland','internet_top_pop/HiberniaUk','internet_top_pop/HiberniaUs','internet_top_pop/Highwinds','internet_top_pop/HostwayInternational','internet_top_pop/HurricaneElectric','internet_top_pop/Ibm','internet_top_pop/Iij','internet_top_pop/Iinet','internet_top_pop/Ilan','internet_top_pop/Integra','internet_top_pop/Intellifiber','internet_top_pop/Internetmci','internet_top_pop/Internode','internet_top_pop/Interoute','internet_top_pop/Intranetwork','internet_top_pop/Ion','internet_top_pop/IowaStatewideFiberMap','internet_top_pop/Iris','internet_top_pop/Istar','internet_top_pop/Itnet','internet_top_pop/Janetbackbone','internet_top_pop/JanetExternal','internet_top_pop/Janetlense','internet_top_pop/Jgn2Plus','internet_top_pop/Karen','internet_top_pop/Kdl','internet_top_pop/KentmanApr2007','internet_top_pop/KentmanAug2005','internet_top_pop/KentmanFeb2008','internet_top_pop/KentmanJan2011','internet_top_pop/KentmanJul2005','internet_top_pop/Kreonet','internet_top_pop/LambdaNet','internet_top_pop/Latnet','internet_top_pop/Layer42','internet_top_pop/Litnet','internet_top_pop/Marnet','internet_top_pop/Marwan','internet_top_pop/Missouri','internet_top_pop/Mren','internet_top_pop/Myren','internet_top_pop/Napnet','internet_top_pop/Navigata','internet_top_pop/Netrail','internet_top_pop/NetworkUsa','internet_top_pop/Nextgen','internet_top_pop/Niif','internet_top_pop/Noel','internet_top_pop/Nordu1989','internet_top_pop/Nordu1997','internet_top_pop/Nordu2005','internet_top_pop/Nordu2010','internet_top_pop/Nsfcnet','internet_top_pop/Nsfnet','internet_top_pop/Ntelos','internet_top_pop/Ntt','internet_top_pop/Oteglobe','internet_top_pop/Oxford','internet_top_pop/Pacificwave','internet_top_pop/Packetexchange','internet_top_pop/Padi','internet_top_pop/Palmetto','internet_top_pop/Peer1','internet_top_pop/Pern','internet_top_pop/PionierL1','internet_top_pop/PionierL3','internet_top_pop/Psinet','internet_top_pop/Quest','internet_top_pop/RedBestel','internet_top_pop/Rediris','internet_top_pop/Renam','internet_top_pop/Renater1999','internet_top_pop/Renater2001','internet_top_pop/Renater2004','internet_top_pop/Renater2006','internet_top_pop/Renater2008','internet_top_pop/Renater2010','internet_top_pop/Restena','internet_top_pop/Reuna','internet_top_pop/Rhnet','internet_top_pop/Rnp','internet_top_pop/Roedunet','internet_top_pop/RoedunetFibre','internet_top_pop/Sago','internet_top_pop/Sanet','internet_top_pop/Sanren','internet_top_pop/Savvis','internet_top_pop/Shentel','internet_top_pop/Sinet','internet_top_pop/Singaren','internet_top_pop/Spiralight','internet_top_pop/Sprint','internet_top_pop/Sunet','internet_top_pop/Surfnet','internet_top_pop/Switch','internet_top_pop/SwitchL3','internet_top_pop/Syringa','internet_top_pop/TataNld','internet_top_pop/Telcove','internet_top_pop/Telecomserbia','internet_top_pop/Tinet','internet_top_pop/TLex','internet_top_pop/Tw','internet_top_pop/Twaren','internet_top_pop/Ulaknet','internet_top_pop/UniC','internet_top_pop/Uninet','internet_top_pop/Uninett2010','internet_top_pop/Uninett2011','internet_top_pop/Uran','internet_top_pop/UsCarrier','internet_top_pop/UsSignal','internet_top_pop/Uunet','internet_top_pop/Vinaren','internet_top_pop/VisionNet','internet_top_pop/VtlWavenet2008','internet_top_pop/VtlWavenet2011','internet_top_pop/WideJpn','internet_top_pop/Xeex','internet_top_pop/Xspedius','internet_top_pop/York','internet_top_pop/Zamren',\n",
    "    # 'copenhagen/sms','copenhagen/fb_friends','copenhagen/calls','copenhagen/bt',\n",
    "    # 'yeast_transcription','uni_email','euroroad','faa_routes','crime','polblogs','collins_yeast','interactome_stelzl',\n",
    "    # 'interactome_yeast','plant_pol_robertson',\n",
    "    # 'kegg_metabolic/aae','kegg_metabolic/afu','kegg_metabolic/ana','kegg_metabolic/ape','kegg_metabolic/atc','kegg_metabolic/ath','kegg_metabolic/atu','kegg_metabolic/bas','kegg_metabolic/bbu','kegg_metabolic/bha','kegg_metabolic/bja','kegg_metabolic/blo','kegg_metabolic/bme','kegg_metabolic/bms','kegg_metabolic/bsu','kegg_metabolic/buc','kegg_metabolic/cac','kegg_metabolic/ccr','kegg_metabolic/cef','kegg_metabolic/cel','kegg_metabolic/cgl','kegg_metabolic/cje','kegg_metabolic/cmu','kegg_metabolic/cpa','kegg_metabolic/cpe','kegg_metabolic/cpj','kegg_metabolic/cpn','kegg_metabolic/cte','kegg_metabolic/ctr','kegg_metabolic/dme','kegg_metabolic/dra','kegg_metabolic/ecc','kegg_metabolic/ece','kegg_metabolic/ecj','kegg_metabolic/eco','kegg_metabolic/ecs','kegg_metabolic/fnu','kegg_metabolic/hal','kegg_metabolic/hin','kegg_metabolic/hpj','kegg_metabolic/hpy','kegg_metabolic/hsa','kegg_metabolic/lil','kegg_metabolic/lin','kegg_metabolic/lla','kegg_metabolic/lmo','kegg_metabolic/mac','kegg_metabolic/mge','kegg_metabolic/mja','kegg_metabolic/mka','kegg_metabolic/mle','kegg_metabolic/mlo','kegg_metabolic/mma','kegg_metabolic/mmu','kegg_metabolic/mpe','kegg_metabolic/mpn','kegg_metabolic/mpu','kegg_metabolic/mtc','kegg_metabolic/mth','kegg_metabolic/mtu','kegg_metabolic/nma','kegg_metabolic/nme','kegg_metabolic/oih','kegg_metabolic/pab','kegg_metabolic/pae','kegg_metabolic/pai','kegg_metabolic/pfu','kegg_metabolic/pho','kegg_metabolic/pmu','kegg_metabolic/rco','kegg_metabolic/rno','kegg_metabolic/rpr','kegg_metabolic/rso','kegg_metabolic/sag','kegg_metabolic/sam','kegg_metabolic/san','kegg_metabolic/sau','kegg_metabolic/sav','kegg_metabolic/sce','kegg_metabolic/sco','kegg_metabolic/sfl','kegg_metabolic/sme','kegg_metabolic/smu','kegg_metabolic/son','kegg_metabolic/spg','kegg_metabolic/spm','kegg_metabolic/spn','kegg_metabolic/spo','kegg_metabolic/spr','kegg_metabolic/spy','kegg_metabolic/sso','kegg_metabolic/stm','kegg_metabolic/sto','kegg_metabolic/sty','kegg_metabolic/syn','kegg_metabolic/tac','kegg_metabolic/tel','kegg_metabolic/tma','kegg_metabolic/tpa','kegg_metabolic/tte','kegg_metabolic/tvo','kegg_metabolic/uur','kegg_metabolic/vch','kegg_metabolic/wbr','kegg_metabolic/xac','kegg_metabolic/xcc','kegg_metabolic/xfa','kegg_metabolic/ype','kegg_metabolic/ypk',\n",
    "    # 'board_directors/net2m_2002-05-01','board_directors/net1m_2002-05-01','board_directors/net2m_2002-06-01','board_directors/net1m_2002-06-01','board_directors/net2m_2002-07-01','board_directors/net1m_2002-07-01','board_directors/net2m_2002-08-01','board_directors/net1m_2002-08-01','board_directors/net2m_2002-09-01','board_directors/net1m_2002-09-01','board_directors/net2m_2002-10-01','board_directors/net1m_2002-10-01','board_directors/net2m_2002-11-01','board_directors/net1m_2002-11-01','board_directors/net2m_2002-12-01','board_directors/net1m_2002-12-01','board_directors/net2m_2003-01-01','board_directors/net1m_2003-01-01','board_directors/net2m_2003-02-01','board_directors/net1m_2003-02-01','board_directors/net2m_2003-03-01','board_directors/net1m_2003-03-01','board_directors/net2m_2003-04-01','board_directors/net1m_2003-04-01','board_directors/net2m_2003-05-01','board_directors/net1m_2003-05-01','board_directors/net2m_2003-06-01','board_directors/net1m_2003-06-01','board_directors/net2m_2003-07-01','board_directors/net1m_2003-07-01','board_directors/net2m_2003-08-01','board_directors/net1m_2003-08-01','board_directors/net2m_2003-09-01','board_directors/net1m_2003-09-01','board_directors/net2m_2003-10-01','board_directors/net1m_2003-10-01','board_directors/net2m_2003-11-01','board_directors/net1m_2003-11-01','board_directors/net2m_2003-12-01','board_directors/net1m_2003-12-01','board_directors/net2m_2004-01-01','board_directors/net1m_2004-01-01','board_directors/net2m_2004-02-01','board_directors/net1m_2004-02-01','board_directors/net2m_2004-03-01','board_directors/net1m_2004-03-01','board_directors/net2m_2004-04-01','board_directors/net1m_2004-04-01','board_directors/net2m_2004-05-01','board_directors/net1m_2004-05-01','board_directors/net2m_2004-06-01','board_directors/net1m_2004-06-01','board_directors/net2m_2004-07-01','board_directors/net1m_2004-07-01','board_directors/net2m_2004-08-01','board_directors/net1m_2004-08-01','board_directors/net2m_2004-09-01','board_directors/net1m_2004-09-01','board_directors/net2m_2004-10-01','board_directors/net1m_2004-10-01','board_directors/net2m_2004-11-01','board_directors/net1m_2004-11-01','board_directors/net2m_2004-12-01','board_directors/net1m_2004-12-01','board_directors/net2m_2005-01-01','board_directors/net1m_2005-01-01','board_directors/net2m_2005-02-01','board_directors/net1m_2005-02-01','board_directors/net2m_2005-03-01','board_directors/net1m_2005-03-01','board_directors/net2m_2005-04-01','board_directors/net1m_2005-04-01','board_directors/net2m_2005-05-01','board_directors/net1m_2005-05-01','board_directors/net2m_2005-06-01','board_directors/net1m_2005-06-01','board_directors/net2m_2005-07-01','board_directors/net1m_2005-07-01','board_directors/net2m_2005-08-01','board_directors/net1m_2005-08-01','board_directors/net2m_2005-09-01','board_directors/net1m_2005-09-01','board_directors/net2m_2005-10-01','board_directors/net1m_2005-10-01','board_directors/net2m_2005-11-01','board_directors/net1m_2005-11-01','board_directors/net2m_2005-12-01','board_directors/net1m_2005-12-01','board_directors/net2m_2006-01-01','board_directors/net1m_2006-01-01','board_directors/net2m_2006-02-01','board_directors/net1m_2006-02-01','board_directors/net2m_2006-03-01','board_directors/net1m_2006-03-01','board_directors/net2m_2006-04-01','board_directors/net1m_2006-04-01','board_directors/net2m_2006-05-01','board_directors/net1m_2006-05-01','board_directors/net2m_2006-06-01','board_directors/net1m_2006-06-01','board_directors/net2m_2006-07-01','board_directors/net1m_2006-07-01','board_directors/net2m_2006-08-01','board_directors/net1m_2006-08-01','board_directors/net2m_2006-09-01','board_directors/net1m_2006-09-01','board_directors/net2m_2006-10-01','board_directors/net1m_2006-10-01','board_directors/net2m_2006-11-01','board_directors/net1m_2006-11-01','board_directors/net2m_2006-12-01','board_directors/net1m_2006-12-01','board_directors/net2m_2007-01-01','board_directors/net1m_2007-01-01','board_directors/net2m_2007-02-01','board_directors/net1m_2007-02-01','board_directors/net2m_2007-03-01','board_directors/net1m_2007-03-01','board_directors/net2m_2007-04-01','board_directors/net1m_2007-04-01','board_directors/net2m_2007-05-01','board_directors/net1m_2007-05-01','board_directors/net2m_2007-06-01','board_directors/net1m_2007-06-01','board_directors/net2m_2007-07-01','board_directors/net1m_2007-07-01','board_directors/net2m_2007-08-01','board_directors/net1m_2007-08-01','board_directors/net2m_2007-09-01','board_directors/net1m_2007-09-01','board_directors/net2m_2007-10-01','board_directors/net1m_2007-10-01','board_directors/net2m_2007-11-01','board_directors/net1m_2007-11-01','board_directors/net2m_2007-12-01','board_directors/net1m_2007-12-01','board_directors/net2m_2008-01-01','board_directors/net1m_2008-01-01','board_directors/net2m_2008-02-01','board_directors/net1m_2008-02-01','board_directors/net2m_2008-03-01','board_directors/net1m_2008-03-01','board_directors/net2m_2008-04-01','board_directors/net1m_2008-04-01','board_directors/net2m_2008-05-01','board_directors/net1m_2008-05-01','board_directors/net2m_2008-06-01','board_directors/net1m_2008-06-01','board_directors/net2m_2008-07-01','board_directors/net1m_2008-07-01','board_directors/net2m_2008-08-01','board_directors/net1m_2008-08-01','board_directors/net2m_2008-09-01','board_directors/net1m_2008-09-01','board_directors/net2m_2008-10-01','board_directors/net1m_2008-10-01','board_directors/net2m_2008-11-01','board_directors/net1m_2008-11-01','board_directors/net2m_2008-12-01','board_directors/net1m_2008-12-01','board_directors/net2m_2009-01-01','board_directors/net1m_2009-01-01','board_directors/net2m_2009-02-01','board_directors/net1m_2009-02-01','board_directors/net2m_2009-03-01','board_directors/net1m_2009-03-01','board_directors/net2m_2009-04-01','board_directors/net1m_2009-04-01','board_directors/net2m_2009-05-01','board_directors/net1m_2009-05-01','board_directors/net2m_2009-06-01','board_directors/net1m_2009-06-01','board_directors/net2m_2009-07-01','board_directors/net1m_2009-07-01','board_directors/net2m_2009-08-01','board_directors/net1m_2009-08-01','board_directors/net2m_2009-09-01','board_directors/net1m_2009-09-01','board_directors/net2m_2009-10-01','board_directors/net1m_2009-10-01','board_directors/net2m_2009-11-01','board_directors/net1m_2009-11-01','board_directors/net2m_2009-12-01','board_directors/net1m_2009-12-01','board_directors/net2m_2010-01-01','board_directors/net1m_2010-01-01','board_directors/net2m_2010-02-01','board_directors/net1m_2010-02-01','board_directors/net2m_2010-03-01','board_directors/net1m_2010-03-01','board_directors/net2m_2010-04-01','board_directors/net1m_2010-04-01','board_directors/net2m_2010-05-01','board_directors/net1m_2010-05-01','board_directors/net2m_2010-06-01','board_directors/net1m_2010-06-01','board_directors/net2m_2010-07-01','board_directors/net1m_2010-07-01','board_directors/net2m_2010-08-01','board_directors/net1m_2010-08-01','board_directors/net2m_2010-09-01','board_directors/net1m_2010-09-01','board_directors/net2m_2010-10-01','board_directors/net1m_2010-10-01','board_directors/net2m_2010-11-01','board_directors/net1m_2010-11-01','board_directors/net2m_2010-12-01','board_directors/net1m_2010-12-01','board_directors/net2m_2011-01-01','board_directors/net1m_2011-01-01','board_directors/net2m_2011-02-01','board_directors/net1m_2011-02-01','board_directors/net2m_2011-03-01','board_directors/net1m_2011-03-01','board_directors/net2m_2011-04-01','board_directors/net1m_2011-04-01','board_directors/net2m_2011-05-01','board_directors/net1m_2011-05-01','board_directors/net2m_2011-06-01','board_directors/net1m_2011-06-01','board_directors/net2m_2011-07-01','board_directors/net1m_2011-07-01','board_directors/net2m_2011-08-01','board_directors/net1m_2011-08-01',\n",
    "    # 'dnc','interactome_figeys',\n",
    "    # 'us_air_traffic',\n",
    "    # 'urban_streets/ahmedabad','urban_streets/barcelona','urban_streets/bologna','urban_streets/brasilia','urban_streets/cairo','urban_streets/irvine1','urban_streets/irvine2','urban_streets/london','urban_streets/los-angeles','urban_streets/new-delhi','urban_streets/new-york','urban_streets/paris','urban_streets/richmond','urban_streets/san-francisco','urban_streets/savannah','urban_streets/seoul','urban_streets/venice','urban_streets/vienna','urban_streets/walnut-creek','urban_streets/washington',\n",
    "    # 'interactome_vidal','power',\n",
    "    # 'facebook_organizations/S1','facebook_organizations/S2','facebook_organizations/M1','facebook_organizations/M2','facebook_organizations/L1','facebook_organizations/L2',\n",
    "    # 'fullerene_structures/C1500','fullerene_structures/C180','fullerene_structures/C2160','fullerene_structures/C240','fullerene_structures/C260','fullerene_structures/C2940','fullerene_structures/C320','fullerene_structures/C3840','fullerene_structures/C4860','fullerene_structures/C500','fullerene_structures/C540','fullerene_structures/C6000','fullerene_structures/C60','fullerene_structures/C720','fullerene_structures/C960',\n",
    "    # 'jung',\n",
    "    # 'celegans_interactomes/wi2007','celegans_interactomes/wi2004','celegans_interactomes/BPmaps','celegans_interactomes/LCI','celegans_interactomes/Microarray','celegans_interactomes/Phenotypes','celegans_interactomes/Interolog','celegans_interactomes/Genetic','celegans_interactomes/WI8','celegans_interactomes/IntegratedNetwork',\n",
    "    # 'reactome','foursquare/NYC_restaurant_checkin','foursquare/NYC_restaurant_tips','jdk',\n",
    "    # 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130','route_views/19990131','route_views/19990201','route_views/19990202','route_views/19990203','route_views/19990204','route_views/19990205','route_views/19990206','route_views/19990207','route_views/19990208','route_views/19990209','route_views/19990210','route_views/19990211','route_views/19990212','route_views/19990213','route_views/19990214','route_views/19990215','route_views/19990216','route_views/19990217','route_views/19990218','route_views/19990219','route_views/19990220','route_views/19990221','route_views/19990222','route_views/19990223','route_views/19990224','route_views/19990225','route_views/19990226','route_views/19990227','route_views/19990228','route_views/19990301','route_views/19990302','route_views/19990303','route_views/19990304','route_views/19990305','route_views/19990306','route_views/19990307','route_views/19990308','route_views/19990309','route_views/19990310','route_views/19990311','route_views/19990312','route_views/19990313','route_views/19990314','route_views/19990315','route_views/19990316','route_views/19990317','route_views/19990318','route_views/19990319','route_views/19990320','route_views/19990321','route_views/19990322','route_views/19990323','route_views/19990324','route_views/19990325','route_views/19990326','route_views/19990327','route_views/19990328','route_views/19990329','route_views/19990330','route_views/19990331','route_views/19990401','route_views/19990402','route_views/19990403','route_views/19990405','route_views/19990406','route_views/19990407','route_views/19990408','route_views/19990409','route_views/19990411','route_views/19990412','route_views/19990413','route_views/19990414','route_views/19990415','route_views/19990416','route_views/19990417','route_views/19990418','route_views/19990419','route_views/19990420','route_views/19990421','route_views/19990422','route_views/19990423','route_views/19990424','route_views/19990425','route_views/19990426','route_views/19990427','route_views/19990428','route_views/19990429','route_views/19990430','route_views/19990501','route_views/19990502','route_views/19990503','route_views/19990504','route_views/19990505','route_views/19990506','route_views/19990507','route_views/19990508','route_views/19990509','route_views/19990510','route_views/19990511','route_views/19990512','route_views/19990513','route_views/19990514','route_views/19990515','route_views/19990516','route_views/19990517','route_views/19990518','route_views/19990519','route_views/19990521','route_views/19990522','route_views/19990523','route_views/19990524','route_views/19990525','route_views/19990526','route_views/19990527','route_views/19990528','route_views/19990529','route_views/19990530','route_views/19990531','route_views/19990601','route_views/19990602','route_views/19990603','route_views/19990604','route_views/19990605','route_views/19990606','route_views/19990607','route_views/19990608','route_views/19990609','route_views/19990610','route_views/19990611','route_views/19990612','route_views/19990613','route_views/19990614','route_views/19990615','route_views/19990616','route_views/19990617','route_views/19990618','route_views/19990619','route_views/19990620','route_views/19990621','route_views/19990622','route_views/19990624','route_views/19990625','route_views/19990626','route_views/19990627','route_views/19990628','route_views/19990629','route_views/19990630','route_views/19990701','route_views/19990702','route_views/19990703','route_views/19990704','route_views/19990705','route_views/19990706','route_views/19990707','route_views/19990708','route_views/19990709','route_views/19990710','route_views/19990711','route_views/19990713','route_views/19990714','route_views/19990715','route_views/19990716','route_views/19990717','route_views/19990718','route_views/19990719','route_views/19990720','route_views/19990721','route_views/19990722','route_views/19990723','route_views/19990724','route_views/19990726','route_views/19990727','route_views/19990728','route_views/19990729','route_views/19990730','route_views/19990731','route_views/19990801','route_views/19990802','route_views/19990804','route_views/19990805','route_views/19990806','route_views/19990807','route_views/19990808','route_views/19990809','route_views/19990810','route_views/19990811','route_views/19990812','route_views/19990813','route_views/19990814','route_views/19990815','route_views/19990816','route_views/19990817','route_views/19990818','route_views/19990819','route_views/19990820','route_views/19990821','route_views/19990822','route_views/19990823','route_views/19990824','route_views/19990825','route_views/19990826','route_views/19990827','route_views/19990828','route_views/19990829','route_views/19990830','route_views/19990831','route_views/19990901','route_views/19990902','route_views/19990903','route_views/19990904','route_views/19990905','route_views/19990906','route_views/19990907','route_views/19990908','route_views/19990909','route_views/19990910','route_views/19990911','route_views/19990912','route_views/19990913','route_views/19990914','route_views/19990915','route_views/19990916','route_views/19990917','route_views/19990918','route_views/19990919','route_views/19990920','route_views/19990921','route_views/19990922','route_views/19990923','route_views/19990924','route_views/19990925','route_views/19990926','route_views/19990927','route_views/19990928','route_views/19990929','route_views/19990930','route_views/19991001','route_views/19991002','route_views/19991003','route_views/19991004','route_views/19991005','route_views/19991006','route_views/19991007','route_views/19991008','route_views/19991009','route_views/19991010','route_views/19991011','route_views/19991013','route_views/19991016','route_views/19991017','route_views/19991018','route_views/19991019','route_views/19991026','route_views/19991027','route_views/19991028','route_views/19991031','route_views/19991105','route_views/19991108','route_views/19991109','route_views/19991110','route_views/19991111','route_views/19991112','route_views/19991113','route_views/19991114','route_views/19991115','route_views/19991116','route_views/19991118','route_views/19991121','route_views/19991122','route_views/19991204','route_views/19991205','route_views/19991206','route_views/19991208','route_views/19991209','route_views/19991210','route_views/19991211','route_views/19991212','route_views/19991213','route_views/19991214','route_views/19991215','route_views/19991216','route_views/19991217','route_views/19991218','route_views/19991219','route_views/19991220','route_views/19991221','route_views/19991222','route_views/19991223','route_views/19991224','route_views/19991225','route_views/19991226','route_views/19991227','route_views/19991228','route_views/19991229','route_views/19991230','route_views/19991231','route_views/20000101','route_views/20000102',\n",
    "    # 'software_dependencies/jdk','software_dependencies/jung-j','software_dependencies/javax','software_dependencies/java','software_dependencies/slucene','software_dependencies/weka','software_dependencies/jung-c','software_dependencies/guava','software_dependencies/org','software_dependencies/colt','software_dependencies/jung','software_dependencies/sjung','software_dependencies/flamingo','software_dependencies/scolt','software_dependencies/jmail','software_dependencies/sjbullet','software_dependencies/junit',\n",
    "    # 'sp_infectious',\n",
    "    # 'word_adjacency/darwin','word_adjacency/french','word_adjacency/spanish','word_adjacency/japanese',\n",
    "    # 'dblp_cite','anybeat','chicago_road','google',\n",
    "    # ##'genetic_multiplex',multilayer\n",
    "    # 'marvel_universe','internet_as','word_assoc','cora','movielens_100k',\n",
    "    # 'caida_as/20071112','caida_as/20071105','caida_as/20071029','caida_as/20071022','caida_as/20071015','caida_as/20071008','caida_as/20071001','caida_as/20070924','caida_as/20070917','caida_as/20070910','caida_as/20070903','caida_as/20070827','caida_as/20070820','caida_as/20070813','caida_as/20070806','caida_as/20070730','caida_as/20070723','caida_as/20070716','caida_as/20070709','caida_as/20070702','caida_as/20070625','caida_as/20070618','caida_as/20070611','caida_as/20070604','caida_as/20070528','caida_as/20070521','caida_as/20070514','caida_as/20070507','caida_as/20070430','caida_as/20070423','caida_as/20070416','caida_as/20070409','caida_as/20070402','caida_as/20070326','caida_as/20070319','caida_as/20070312','caida_as/20070305','caida_as/20070226','caida_as/20070219','caida_as/20070212','caida_as/20070205','caida_as/20070129','caida_as/20070122','caida_as/20070115','caida_as/20070108','caida_as/20070101','caida_as/20061225','caida_as/20061218','caida_as/20061211','caida_as/20061204','caida_as/20061127','caida_as/20061120','caida_as/20061113','caida_as/20061106','caida_as/20061030','caida_as/20061023','caida_as/20061016','caida_as/20061009','caida_as/20061002','caida_as/20060925','caida_as/20060918','caida_as/20060911','caida_as/20060904','caida_as/20060828','caida_as/20060821','caida_as/20060814','caida_as/20060807','caida_as/20060731','caida_as/20060724','caida_as/20060717','caida_as/20060710','caida_as/20060703','caida_as/20060626','caida_as/20060619','caida_as/20060612','caida_as/20060605','caida_as/20060529','caida_as/20060522','caida_as/20060515','caida_as/20060508','caida_as/20060501','caida_as/20060424','caida_as/20060417','caida_as/20060410','caida_as/20060403','caida_as/20060327','caida_as/20060320','caida_as/20060313','caida_as/20060306','caida_as/20060227','caida_as/20060220','caida_as/20060213','caida_as/20060206','caida_as/20060130','caida_as/20060123','caida_as/20060116','caida_as/20060109','caida_as/20060102','caida_as/20051205','caida_as/20051107','caida_as/20051003','caida_as/20050905','caida_as/20050801','caida_as/20050704','caida_as/20050606','caida_as/20050502','caida_as/20050404','caida_as/20050307','caida_as/20050207','caida_as/20050103','caida_as/20041206','caida_as/20041101','caida_as/20041004','caida_as/20040906','caida_as/20040802','caida_as/20040705','caida_as/20040607','caida_as/20040503','caida_as/20040405','caida_as/20040301','caida_as/20040202','caida_as/20040105',\n",
    "    # 'digg_reply','nematode_mammal',\n",
    "    # 'linux',\n",
    "    # 'arxiv_citation/HepPh','arxiv_citation/HepTh',\n",
    "    # 'scotus_majority/2008','scotus_majority/2007','topology',\n",
    "    ##'hiv_transmission',restricted access\n",
    "    # 'email_enron','inploid','pgp_strong',\n",
    "    # 'paris_transportation','slashdot_threads','python_dependency',\n",
    "    # 'gnutella/04','gnutella/06','gnutella/08','gnutella/09','gnutella/24','gnutella/25','gnutella/30','gnutella/31',\n",
    "    # 'lkml_reply','marker_cafe',\n",
    "    # 'epinions_trust','twitter_15m','prosper','wiki_link_dyn','livemocha',\n",
    "    ## PROBLEMS 'ego_social/facebook_0','ego_social/facebook_107','ego_social/facebook_348','ego_social/facebook_414','ego_social/facebook_686','ego_social/facebook_698','ego_social/facebook_1684','ego_social/facebook_1912','ego_social/facebook_3437','ego_social/facebook_3980','ego_social/facebook_combined','ego_social/gplus_100129275726588145876','ego_social/gplus_100329698645326486178','ego_social/gplus_100466178325794757407','ego_social/gplus_100500197140377336562','ego_social/gplus_100518419853963396365','ego_social/gplus_100521671383026672718','ego_social/gplus_100535338638690515335','ego_social/gplus_100637660947564674695','ego_social/gplus_100668989009254813743','ego_social/gplus_100715738096376666180','ego_social/gplus_100720409235366385249','ego_social/gplus_100962871525684315897','ego_social/gplus_101130571432010257170','ego_social/gplus_101133961721621664586','ego_social/gplus_101185748996927059931','ego_social/gplus_101263615503715477581','ego_social/gplus_101373961279443806744','ego_social/gplus_101499880233887429402','ego_social/gplus_101541879642294398860','ego_social/gplus_101560853443212199687','ego_social/gplus_101626577406833098387','ego_social/gplus_101848191156408080085','ego_social/gplus_101997124338642780860','ego_social/gplus_102170431816592344972','ego_social/gplus_102340116189726655233','ego_social/gplus_102615863344410467759','ego_social/gplus_102778563580121606331','ego_social/gplus_103236949470535942612','ego_social/gplus_103241736833663734962','ego_social/gplus_103251633033550231172','ego_social/gplus_103338524411980406972','ego_social/gplus_103503116383846951534','ego_social/gplus_103537112468125883734','ego_social/gplus_103752943025677384806','ego_social/gplus_103892332449873403244','ego_social/gplus_104076158580173410325','ego_social/gplus_104105354262797387583','ego_social/gplus_104226133029319075907','ego_social/gplus_104290609881668164623','ego_social/gplus_104607825525972194062','ego_social/gplus_104672614700283598130','ego_social/gplus_104905626100400792399','ego_social/gplus_104917160754181459072','ego_social/gplus_104987932455782713675','ego_social/gplus_105565257978663183206','ego_social/gplus_105646458226420473639','ego_social/gplus_106186407539128840569','ego_social/gplus_106228758905254036967','ego_social/gplus_106328207304735502636','ego_social/gplus_106382433884876652170','ego_social/gplus_106417861423111072106','ego_social/gplus_106724181552911298818','ego_social/gplus_106837574755355833243','ego_social/gplus_107013688749125521109','ego_social/gplus_107040353898400532534','ego_social/gplus_107203023379915799071','ego_social/gplus_107223200089245371832','ego_social/gplus_107296660002634487593','ego_social/gplus_107362628080904735459','ego_social/gplus_107459220492917008623','ego_social/gplus_107489144252174167638','ego_social/gplus_107965826228461029730','ego_social/gplus_108156134340151350951','ego_social/gplus_108404515213153345305','ego_social/gplus_108541235642523883716','ego_social/gplus_108883879052307976051','ego_social/gplus_109130886479781915270','ego_social/gplus_109213135085178239952','ego_social/gplus_109327480479767108490','ego_social/gplus_109342148209917802565','ego_social/gplus_109596373340495798827','ego_social/gplus_109602109099036550366','ego_social/gplus_110232479818136355682','ego_social/gplus_110241952466097562819','ego_social/gplus_110538600381916983600','ego_social/gplus_110581012109008817546','ego_social/gplus_110614416163543421878','ego_social/gplus_110701307803962595019','ego_social/gplus_110739220927723360152','ego_social/gplus_110809308822849680310','ego_social/gplus_110971010308065250763','ego_social/gplus_111048918866742956374','ego_social/gplus_111058843129764709244','ego_social/gplus_111091089527727420853','ego_social/gplus_111213696402662884531','ego_social/gplus_112317819390625199896','ego_social/gplus_112463391491520264813','ego_social/gplus_112573107772208475213','ego_social/gplus_112724573277710080670','ego_social/gplus_112737356589974073749','ego_social/gplus_112787435697866537461','ego_social/gplus_113112256846010263985','ego_social/gplus_113122049849685469495','ego_social/gplus_113171096418029011322','ego_social/gplus_113356364521839061717','ego_social/gplus_113455290791279442483','ego_social/gplus_113597493946570654755','ego_social/gplus_113718775944980638561','ego_social/gplus_113799277735885972934','ego_social/gplus_113881433443048137993','ego_social/gplus_114054672576929802335','ego_social/gplus_114104634069486127920','ego_social/gplus_114122960748905067938','ego_social/gplus_114124942936679476879','ego_social/gplus_114147483140782280818','ego_social/gplus_114336431216099933033','ego_social/gplus_115121555137256496805','ego_social/gplus_115273860520983542999','ego_social/gplus_115360471097759949621','ego_social/gplus_115455024457484679647','ego_social/gplus_115516333681138986628','ego_social/gplus_115573545440464933254','ego_social/gplus_115576988435396060952','ego_social/gplus_115625564993990145546','ego_social/gplus_116059998563577101552','ego_social/gplus_116247667398036716276','ego_social/gplus_116315897040732668413','ego_social/gplus_116450966137824114154','ego_social/gplus_116807883656585676940','ego_social/gplus_116825083494890429556','ego_social/gplus_116899029375914044550','ego_social/gplus_116931379084245069738','ego_social/gplus_117412175333096244275','ego_social/gplus_117503822947457399073','ego_social/gplus_117668392750579292609','ego_social/gplus_117734260411963901771','ego_social/gplus_117798157258572080176','ego_social/gplus_117866881767579360121','ego_social/gplus_118107045405823607895','ego_social/gplus_118255645714452180374','ego_social/gplus_118379821279745746467','ego_social/gplus_combined',\n",
    "    # 'foursquare_friendships/old','foursquare_friendships/new',\n",
    "    # 'arxiv_authors/AstroPh','arxiv_authors/CondMat','arxiv_authors/GrQc','arxiv_authors/HepPh','arxiv_authors/HepTh',\n",
    "    # 'dbpedia_writer','lastfm_aminer','wordnet','dbtropes_feature','douban','dbpedia_starring',\n",
    "    # 'github','dbpedia_recordlabel','dbpedia_producer','academia_edu','google_plus','flickr_aminer',\n",
    "    # 'dbpedia_location','dbpedia_occupation','email_eu','dbpedia_genre','discogs_label','stanford_web',\n",
    "    # 'notre_dame_web','corporate_directors',\n",
    "    # ##'openstreetmap', 90K networs!\n",
    "    # 'lkml_thread','citeseer',\n",
    "    # 'amazon_copurchases/302','amazon_copurchases/312','amazon_copurchases/505','amazon_copurchases/601',\n",
    "    # 'dblp_coauthor_snap','bookcrossing','twitter','flickr_groups','visualizeus','dbpedia_country','petster',\n",
    "    # 'stackoverflow','yahoo_ads','berkstan_web','myspace_aminer','citeulike','google_web','dbpedia_team',\n",
    "    # 'bibsonomy','reuters',\n",
    "    # 'lastfm/band','lastfm/song',\n",
    "    # 'wikitree','hyves','trec_web','as_skitter','trec','discogs_genre',\n",
    "    # 'dblp_coauthor',\n",
    "    # 'wikipedia_growth',\n",
    "    # 'roadnet/CA','roadnet/PA','roadnet/TX',\n",
    "    # 'discogs_affiliation','wiki_categories','baidu',\n",
    "    # 'twitter_events/NYClimateMarch2014','twitter_events/Cannes2013','twitter_events/MoscowAthletics2013','twitter_events/MLKing2013','twitter_events/ObamaInIsrael2013',\n",
    "    # 'flickr_growth','wikipedia-en-talk','flixster',\n",
    "    # 'qa_user/stackoverflow_all','qa_user/stackoverflow_a2q','qa_user/stackoverflow_c2q','qa_user/stackoverflow_c2a','qa_user/mathoverflow_all','qa_user/mathoverflow_a2q','qa_user/mathoverflow_c2q','qa_user/mathoverflow_c2a','qa_user/superuser_all','qa_user/superuser_a2q','qa_user/superuser_c2q','qa_user/superuser_c2a','qa_user/askubuntu_all','qa_user/askubuntu_a2q','qa_user/askubuntu_c2q','qa_user/askubuntu_c2a',\n",
    "    ###'mag_history_coauthor','mag_geology_coauthor', these could be weighted\n",
    "    #'wiki_talk/ar','wiki_talk/bn','wiki_talk/br','wiki_talk/ca','wiki_talk/cy','wiki_talk/de','wiki_talk/el','wiki_talk/en','wiki_talk/eo','wiki_talk/es','wiki_talk/eu','wiki_talk/fr','wiki_talk/gl','wiki_talk/ht','wiki_talk/it','wiki_talk/ja','wiki_talk/lv','wiki_talk/nds','wiki_talk/nl','wiki_talk/oc','wiki_talk/pl','wiki_talk/pt','wiki_talk/ru','wiki_talk/sk','wiki_talk/sr','wiki_talk/sv','wiki_talk/vi','wiki_talk/zh',\n",
    "    #'livejournal_aminer',\n",
    "    ##'us_patents', error\n",
    "    #'foursquare_global','dbpedia_all',\n",
    "    ###'livejournal',errore\n",
    "    #'mislove_osn/flickr','mislove_osn/livejournal','mislove_osn/orkut','mislove_osn/youtube',\n",
    "    #'twitter_sample',\n",
    "    #'dblp_simplices/max-25-bip','dblp_simplices/max-25-proj','dblp_simplices/full-bip','dblp_simplices/full-proj',\n",
    "    #'bitcoin','dblp_author_paper',\n",
    "    #'wikipedia_link/af','wikipedia_link/als','wikipedia_link/am','wikipedia_link/an','wikipedia_link/ar','wikipedia_link/arz','wikipedia_link/as','wikipedia_link/ast','wikipedia_link/az','wikipedia_link/ba','wikipedia_link/bar','wikipedia_link/bat_smg','wikipedia_link/bcl','wikipedia_link/be','wikipedia_link/be_x_old','wikipedia_link/bg','wikipedia_link/bh','wikipedia_link/bn','wikipedia_link/bpy','wikipedia_link/br','wikipedia_link/bs','wikipedia_link/bug','wikipedia_link/ca','wikipedia_link/cdo','wikipedia_link/ce','wikipedia_link/ceb','wikipedia_link/ckb','wikipedia_link/co','wikipedia_link/crh','wikipedia_link/cs','wikipedia_link/csb','wikipedia_link/cv','wikipedia_link/cy','wikipedia_link/da','wikipedia_link/de','wikipedia_link/diq','wikipedia_link/dv','wikipedia_link/el','wikipedia_link/eml','wikipedia_link/en','wikipedia_link/eo','wikipedia_link/es','wikipedia_link/et','wikipedia_link/eu','wikipedia_link/fa','wikipedia_link/fi','wikipedia_link/fiu_vro','wikipedia_link/fo','wikipedia_link/fr','wikipedia_link/fy','wikipedia_link/ga','wikipedia_link/gag','wikipedia_link/gan','wikipedia_link/gd','wikipedia_link/gl','wikipedia_link/glk','wikipedia_link/gu','wikipedia_link/gv','wikipedia_link/hak','wikipedia_link/he','wikipedia_link/hi','wikipedia_link/hif','wikipedia_link/hr','wikipedia_link/hsb','wikipedia_link/ht','wikipedia_link/hu','wikipedia_link/hy','wikipedia_link/ia','wikipedia_link/id','wikipedia_link/ilo','wikipedia_link/io','wikipedia_link/is','wikipedia_link/it','wikipedia_link/ja','wikipedia_link/jv','wikipedia_link/ka','wikipedia_link/kk','wikipedia_link/kn','wikipedia_link/ko','wikipedia_link/ku','wikipedia_link/kv','wikipedia_link/ky','wikipedia_link/la','wikipedia_link/lb','wikipedia_link/lez','wikipedia_link/li','wikipedia_link/lmo','wikipedia_link/lo','wikipedia_link/lt','wikipedia_link/lv','wikipedia_link/map_bms','wikipedia_link/mg','wikipedia_link/mhr','wikipedia_link/mi','wikipedia_link/min','wikipedia_link/mk','wikipedia_link/ml','wikipedia_link/mn','wikipedia_link/mr','wikipedia_link/ms','wikipedia_link/my','wikipedia_link/myv','wikipedia_link/mzn','wikipedia_link/nah','wikipedia_link/nap','wikipedia_link/nds','wikipedia_link/nds_nl','wikipedia_link/ne','wikipedia_link/new','wikipedia_link/nl','wikipedia_link/nn','wikipedia_link/no','wikipedia_link/nso','wikipedia_link/oc','wikipedia_link/or','wikipedia_link/os','wikipedia_link/pa','wikipedia_link/pam','wikipedia_link/pl','wikipedia_link/pms','wikipedia_link/pnb','wikipedia_link/ps','wikipedia_link/pt','wikipedia_link/qu','wikipedia_link/ro','wikipedia_link/roa_tara','wikipedia_link/ru','wikipedia_link/rue','wikipedia_link/sa','wikipedia_link/sah','wikipedia_link/scn','wikipedia_link/sco','wikipedia_link/se','wikipedia_link/sh','wikipedia_link/si','wikipedia_link/simple','wikipedia_link/sk','wikipedia_link/sl','wikipedia_link/so','wikipedia_link/sq','wikipedia_link/sr','wikipedia_link/su','wikipedia_link/sv','wikipedia_link/sw','wikipedia_link/ta','wikipedia_link/te','wikipedia_link/tg','wikipedia_link/th','wikipedia_link/tk','wikipedia_link/tl','wikipedia_link/tr','wikipedia_link/tt','wikipedia_link/uk','wikipedia_link/ur','wikipedia_link/uz','wikipedia_link/vec','wikipedia_link/vi','wikipedia_link/vls','wikipedia_link/vo','wikipedia_link/wa','wikipedia_link/war','wikipedia_link/xal','wikipedia_link/xmf','wikipedia_link/yi','wikipedia_link/yo','wikipedia_link/zh','wikipedia_link/zh_min_nan','wikipedia_link/zh_yue',\n",
    "    #'dbpedia_link',\n",
    "    ##'us_roads/AK','us_roads/AL','us_roads/AR','us_roads/AZ','us_roads/CA','us_roads/CO','us_roads/CT','us_roads/DC','us_roads/DE','us_roads/FL','us_roads/GA','us_roads/HI','us_roads/IA','us_roads/ID','us_roads/IL','us_roads/IN','us_roads/KS','us_roads/KY','us_roads/LA','us_roads/MA','us_roads/MD','us_roads/ME','us_roads/MI','us_roads/MN','us_roads/MO','us_roads/MS','us_roads/MT','us_roads/NC','us_roads/ND','us_roads/NE','us_roads/NH','us_roads/NJ','us_roads/NM','us_roads/NV','us_roads/NY','us_roads/OH','us_roads/OK','us_roads/OR','us_roads/PA','us_roads/RI','us_roads/SC','us_roads/SD','us_roads/TN','us_roads/TX','us_roads/UT','us_roads/VA','us_roads/VT','us_roads/WA','us_roads/WI','us_roads/WV','us_roads/WY','us_roads/merged',  BIG\n",
    "    'delicious/ut','delicious/ti','delicious/ui',\n",
    "    'trackers','twitter_social','twitter_2009',\n",
    "    ##'soc_net_comms/friendster','soc_net_comms/livejournal','soc_net_comms/orkut','soc_net_comms/youtube','soc_net_comms/dblp','soc_net_comms/amazon' BIG\n",
    "    ]\n",
    "\n",
    "#Unfortunately, not all models classified as weighted have weights. We handle these cases setting deafult weight 1\n",
    "#model_names=[\"hens\"] # DOES NOT HAVE WEIGHTS! The default '1' will be set to all edges\n",
    "\n",
    "# prefix_to_weight={'eu_procurements_alt/':'pctSingleBid','arxiv_collab/':'value','bag_of_words/':'count',\n",
    "#                   'budapest_connectome/':'occurences','celegans_2019':'connectivity',\n",
    "#                   'us_agencies/':'link_counts','plant_pol_vazquez':'count'}\n",
    "\n",
    "#Set flags on where to store the obtained CSV files\n",
    "download_file=False\n",
    "store_on_gdrive=True\n",
    "path_g_drive=\"unweightedGraphs/\"\n",
    "export_all_unweightedGraphs_erodeCSV(model_names,download_file,store_on_gdrive,path_g_drive)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# If interested in drawing"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# from graph_tool.all import *\n",
    "# g = collection.data[\"celegansneural\"]\n",
    "# state = minimize_nested_blockmodel_dl(g)\n",
    "# state = minimize_nested_blockmodel_dl(g)\n",
    "# state.draw()"
   ]
  }
 ],
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