Error Installation

[hanhandata]

Hi @Secbone and All,

I have stuck about installation, do you know about error the below ?

 cdef number[:] c_sum_axis_1(number[:,:] arr):
          cdef number[:] res = np.zeros(arr.shape[0], dtype=float)
               ^
      ------------------------------------------------------------
      
      toad/c_utils.pyx:40:9: 'number' is not a type identifier
      Compiling toad/c_utils.pyx because it changed.
      Compiling toad/merge.pyx because it changed.
      [1/2] Cythonizing toad/c_utils.pyx
      Traceback (most recent call last):
        File "/Users/nbmhqa114/anaconda3/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
          main()
        File "/Users/nbmhqa114/anaconda3/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
        File "/Users/nbmhqa114/anaconda3/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
          return hook(config_settings)
        File "/private/var/folders/s_/2cqjhlf54rd53_wlvmjgvcv80000gn/T/pip-build-env-57tm1n23/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 341, in get_requires_for_build_wheel
          return self._get_build_requires(config_settings, requirements=['wheel'])
        File "/private/var/folders/s_/2cqjhlf54rd53_wlvmjgvcv80000gn/T/pip-build-env-57tm1n23/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 323, in _get_build_requires
          self.run_setup()
        File "/private/var/folders/s_/2cqjhlf54rd53_wlvmjgvcv80000gn/T/pip-build-env-57tm1n23/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 338, in run_setup
          exec(code, locals())
        File "<string>", line 59, in <module>
        File "<string>", line 27, in get_ext_modules
        File "/private/var/folders/s_/2cqjhlf54rd53_wlvmjgvcv80000gn/T/pip-build-env-57tm1n23/overlay/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1134, in cythonize
          cythonize_one(*args)
        File "/private/var/folders/s_/2cqjhlf54rd53_wlvmjgvcv80000gn/T/pip-build-env-57tm1n23/overlay/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1301, in cythonize_one
          raise CompileError(None, pyx_file)
      Cython.Compiler.Errors.CompileError: toad/c_utils.pyx
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

Han

[Secbone]

@hanhandata could you try to update your cython version or install toad from whl file from pypi?

[hanhandata]

Hi @Secbone I will try

[septem9908]

python 3.10.12
cython 3.0.4 (most updated)
pip 23.3.1 (most updated)
failed to install toad 0.1.2, with the same error message above

[kulig1985]

Same happens for me.. Any solution?

[Secbone]

python 3.10.12 cython 3.0.4 (most updated) pip 23.3.1 (most updated) failed to install toad 0.1.2, with the same error message above

@septem9908 what is your numpy version? could your has some error details?

[Secbone]

Same happens for me.. Any solution?

@kulig1985 have some details?

[DjokerR]

os: openeuler-arm64
python: 3.9.17

1、下载toad-0.1.3.tar.gz 并解压到/tmp 目录下
tar -zxvf toad-0.1.3.tar.gz -C /tmp/

2、 pip --version 找到python site-packages 路径
比如我的是/opt/conda/lib/python3.9/site-packages

3、将解压后的toad下所有的文件拷贝到site-packages 路径下
cp -r /tmp/toad-0.1.3/* /opt/conda/lib/python3.9/site-packages

4、到site-packages 路径下 pip install toad
cd /opt/conda/lib/python3.9/site-packages && pip install toad

5、到任意目录下执行python -c "import toad ;print(toad.version)"

6、注意： 如果不将toad 放到python site-packages目录下，是无法在任意目录import toad

[willyoung7077]

@hanhandata and all,

I think I can end this issue

There are two steps to solve this problem.

Step1：
According to my experiences. This issue only happens on MacOS.
Like Mine: Apple M2/ Platform: osx-arm64

If you're not sure what platform your MacOS is,
uname -a in MacOS Terminal,
Darwin localhost 23.2.0 Darwin Kernel Version 23.2.0 .... arm64

arm64 is the key point.

There are a lot of things not doing well on osx-arm64, like python 3.7

solution: highly-voted answer
https://stackoverflow.com/questions/70205633/cannot-install-python-3-7-on-osx-arm64

conda create -n py37
conda activate py37
#key code:
conda config --env --set subdir osx-64
conda install python=3.7

The version of python doesn't matter

your osx-arm64 changes to osx-64

Step2:

Do not use pip install toad

still return error

Use conda install toad
add --channel conda-forge or not

will@localhost ~ % conda install toad  --channel conda-forge
Channels:
 - conda-forge
 - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
 - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
 - defaults
Platform: osx-64
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /Users/will/anaconda3/envs/python38

  added / updated specs:
    - toad


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    brotli-python-1.1.0        |   py38h940360d_1         358 KB  conda-forge
    charset-normalizer-3.3.2   |     pyhd8ed1ab_0          46 KB  conda-forge
    contourpy-1.1.1            |   py38h15a1a5b_1         212 KB  conda-forge
    cycler-0.12.1              |     pyhd8ed1ab_0          13 KB  conda-forge
    fonttools-4.53.0           |   py38hc718529_0         2.1 MB  conda-forge
    idna-3.7                   |     pyhd8ed1ab_0          51 KB  conda-forge
    importlib-resources-6.4.0  |     pyhd8ed1ab_0           9 KB  conda-forge
    importlib_resources-6.4.0  |     pyhd8ed1ab_0          32 KB  conda-forge
    joblib-1.4.2               |     pyhd8ed1ab_0         215 KB  conda-forge
    kiwisolver-1.4.5           |   py38h15a1a5b_1          59 KB  conda-forge
    lcms2-2.16                 |       ha2f27b4_0         219 KB  conda-forge
    libdeflate-1.20            |       h49d49c5_0          69 KB  conda-forge
    libjpeg-turbo-3.0.0        |       h0dc2134_1         566 KB  conda-forge
    libtiff-4.6.0              |       h129831d_3         251 KB  conda-forge
    libxcb-1.16                |       h0dc2134_0         315 KB  conda-forge
    matplotlib-base-3.7.3      |   py38hcd1b199_0         6.4 MB  conda-forge
    numpy-1.24.4               |   py38h9a4a08f_0         6.0 MB  conda-forge
    openjpeg-2.5.2             |       h7310d3a_0         324 KB  conda-forge
    packaging-24.1             |     pyhd8ed1ab_0          49 KB  conda-forge
    pandas-2.0.3               |   py38h78e6021_1        11.0 MB  conda-forge
    pillow-10.3.0              |   py38hf802781_1        39.8 MB  conda-forge
    platformdirs-4.2.2         |     pyhd8ed1ab_0          20 KB  conda-forge
    pooch-1.8.2                |     pyhd8ed1ab_0          53 KB  conda-forge
    pysocks-1.7.1              |     pyha2e5f31_6          19 KB  conda-forge
    python-tzdata-2024.1       |     pyhd8ed1ab_0         141 KB  conda-forge
    python_abi-3.8             |           4_cp38           6 KB  conda-forge
    requests-2.32.3            |     pyhd8ed1ab_0          57 KB  conda-forge
    scikit-learn-1.3.2         |   py38h43a65be_2         7.1 MB  conda-forge
    scipy-1.10.1               |   py38h9cf86d3_3        14.7 MB  conda-forge
    seaborn-0.13.2             |       hd8ed1ab_2           7 KB  conda-forge
    seaborn-base-0.13.2        |     pyhd8ed1ab_2         229 KB  conda-forge
    statsmodels-0.14.1         |   py38h7092abf_0        10.0 MB  conda-forge
    threadpoolctl-3.5.0        |     pyhc1e730c_0          23 KB  conda-forge
    toad-0.1.0                 |   py38hef030d1_2        12.7 MB  conda-forge
    unicodedata2-15.1.0        |   py38hcafd530_0         361 KB  conda-forge
    urllib3-2.2.2              |     pyhd8ed1ab_0          93 KB  conda-forge
    zipp-3.19.2                |     pyhd8ed1ab_0          20 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       113.5 MB

The following NEW packages will be INSTALLED:

  brotli             conda-forge/osx-64::brotli-1.1.0-h0dc2134_1 
  brotli-bin         conda-forge/osx-64::brotli-bin-1.1.0-h0dc2134_1 
  brotli-python      conda-forge/osx-64::brotli-python-1.1.0-py38h940360d_1 
  certifi            conda-forge/noarch::certifi-2024.6.2-pyhd8ed1ab_0 
  charset-normalizer conda-forge/noarch::charset-normalizer-3.3.2-pyhd8ed1ab_0 
  contourpy          conda-forge/osx-64::contourpy-1.1.1-py38h15a1a5b_1 
  cycler             conda-forge/noarch::cycler-0.12.1-pyhd8ed1ab_0 
  fonttools          conda-forge/osx-64::fonttools-4.53.0-py38hc718529_0 
  freetype           conda-forge/osx-64::freetype-2.12.1-h60636b9_2 
  idna               conda-forge/noarch::idna-3.7-pyhd8ed1ab_0 
  importlib-resourc~ conda-forge/noarch::importlib-resources-6.4.0-pyhd8ed1ab_0 
  importlib_resourc~ conda-forge/noarch::importlib_resources-6.4.0-pyhd8ed1ab_0 
  joblib             conda-forge/noarch::joblib-1.4.2-pyhd8ed1ab_0 
  kiwisolver         conda-forge/osx-64::kiwisolver-1.4.5-py38h15a1a5b_1 
  lcms2              conda-forge/osx-64::lcms2-2.16-ha2f27b4_0 
  lerc               conda-forge/osx-64::lerc-4.0.0-hb486fe8_0 
  libblas            conda-forge/osx-64::libblas-3.9.0-20_osx64_openblas 
  libbrotlicommon    conda-forge/osx-64::libbrotlicommon-1.1.0-h0dc2134_1 
  libbrotlidec       conda-forge/osx-64::libbrotlidec-1.1.0-h0dc2134_1 
  libbrotlienc       conda-forge/osx-64::libbrotlienc-1.1.0-h0dc2134_1 
  libcblas           conda-forge/osx-64::libcblas-3.9.0-20_osx64_openblas 
  libcxx             conda-forge/osx-64::libcxx-17.0.6-h88467a6_0 
  libdeflate         conda-forge/osx-64::libdeflate-1.20-h49d49c5_0 
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3 
  libgfortran5       conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3 
  libjpeg-turbo      conda-forge/osx-64::libjpeg-turbo-3.0.0-h0dc2134_1 
  liblapack          conda-forge/osx-64::liblapack-3.9.0-20_osx64_openblas 
  libopenblas        conda-forge/osx-64::libopenblas-0.3.25-openmp_hfef2a42_0 
  libpng             conda-forge/osx-64::libpng-1.6.43-h92b6c6a_0 
  libtiff            conda-forge/osx-64::libtiff-4.6.0-h129831d_3 
  libwebp-base       conda-forge/osx-64::libwebp-base-1.4.0-h10d778d_0 
  libxcb             conda-forge/osx-64::libxcb-1.16-h0dc2134_0 
  llvm-openmp        conda-forge/osx-64::llvm-openmp-18.1.8-h15ab845_0 
  matplotlib-base    conda-forge/osx-64::matplotlib-base-3.7.3-py38hcd1b199_0 
  munkres            conda-forge/noarch::munkres-1.1.4-pyh9f0ad1d_0 
  numpy              conda-forge/osx-64::numpy-1.24.4-py38h9a4a08f_0 
  openjpeg           conda-forge/osx-64::openjpeg-2.5.2-h7310d3a_0 
  packaging          conda-forge/noarch::packaging-24.1-pyhd8ed1ab_0 
  pandas             conda-forge/osx-64::pandas-2.0.3-py38h78e6021_1 
  patsy              conda-forge/noarch::patsy-0.5.6-pyhd8ed1ab_0 
  pillow             conda-forge/osx-64::pillow-10.3.0-py38hf802781_1 
  platformdirs       conda-forge/noarch::platformdirs-4.2.2-pyhd8ed1ab_0 
  pooch              conda-forge/noarch::pooch-1.8.2-pyhd8ed1ab_0 
  pthread-stubs      conda-forge/osx-64::pthread-stubs-0.4-hc929b4f_1001 
  pyparsing          conda-forge/noarch::pyparsing-3.1.2-pyhd8ed1ab_0 
  pysocks            conda-forge/noarch::pysocks-1.7.1-pyha2e5f31_6 
  python-dateutil    conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0 
  python-tzdata      conda-forge/noarch::python-tzdata-2024.1-pyhd8ed1ab_0 
  python_abi         conda-forge/osx-64::python_abi-3.8-4_cp38 
  pytz               conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0 
  requests           conda-forge/noarch::requests-2.32.3-pyhd8ed1ab_0 
  scikit-learn       conda-forge/osx-64::scikit-learn-1.3.2-py38h43a65be_2 
  scipy              conda-forge/osx-64::scipy-1.10.1-py38h9cf86d3_3 
  seaborn            conda-forge/noarch::seaborn-0.13.2-hd8ed1ab_2 
  seaborn-base       conda-forge/noarch::seaborn-base-0.13.2-pyhd8ed1ab_2 
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 
  statsmodels        conda-forge/osx-64::statsmodels-0.14.1-py38h7092abf_0 
  threadpoolctl      conda-forge/noarch::threadpoolctl-3.5.0-pyhc1e730c_0 
  toad               conda-forge/osx-64::toad-0.1.0-py38hef030d1_2 
  unicodedata2       conda-forge/osx-64::unicodedata2-15.1.0-py38hcafd530_0 
  urllib3            conda-forge/noarch::urllib3-2.2.2-pyhd8ed1ab_0 
  xorg-libxau        conda-forge/osx-64::xorg-libxau-1.0.11-h0dc2134_0 
  xorg-libxdmcp      conda-forge/osx-64::xorg-libxdmcp-1.1.3-h35c211d_0 
  zipp               conda-forge/noarch::zipp-3.19.2-pyhd8ed1ab_0 
  zstd               conda-forge/osx-64::zstd-1.5.6-h915ae27_0 

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    conda-forge/osx-arm64::ca-certificate~ --> conda-forge/osx-64::ca-certificates-2024.6.2-h8857fd0_0 
  openssl            conda-forge/osx-arm64::openssl-3.3.1-~ --> conda-forge/osx-64::openssl-3.3.1-h87427d6_0 


Proceed ([y]/n)? y


Downloading and Extracting Packages:
                                                                                                                                                   
Preparing transaction: done                                                                                                                        
Verifying transaction: done                                                                                                                        
Executing transaction: done          

PS:
As for another setup method：
https://github.com/amphibian-dev/toad

Source code
python setup.py install

I didn't try .

This issue takes me a lot of time to solve it , wish you have a good day , dudes