make_fasta_db

#!/usr/bin/python
# coding=utf-8

"""
Created on Mar 19, 2016

@author: Allis Tauri <allista@gmail.com>
"""

from BioUtils.SeqUtils import SeqView, safe_write
from BioUtils.Tools.Multiprocessing import MPMain

class Main(MPMain):
    def _main(self):
        self.argument('dbname', type=str,
                      help='Base name of the database to create. Extension will be added automatically.')
        self.argument('filename', type=str, nargs='+',
                      help='Sequence file(s). If several files are provided they should be of the same type (genbank, fasta, etc).')
        self.parse_args()
        db = SeqView()
        db.load(self.args.filename)
        safe_write(db, self.args.dbname+'.fasta')

if __name__ == '__main__':
    Main(run=True)