#!/bin/bash name=$1 priorName=$2 #for cores in 1 2 3 4 5 #do echo $name day=$(date +"%Y%m%d") #Rscript runInference.R numberOfCores nameOfRun rdsFileArrayOfExperimentalData numberOfStepsForRun OutputFilesLocation OptionalBooleanForOnlyAdjacentTransitions OptionalInitialStateForMCMC #parallel --bibtex for letters in A B C D do sem --id $name$day -j 8 "Rscript runInferenceEqMAg20201122.R 4 ${name}nmt81clr3$letters TM/TM_nmt81clr3trans.rds 10000 /anvil/scratch/x-farhat/bufferRates/ F /anvil/scratch/x-farhat/bufferRates/${priorName}nmt81clr3${letters}_savestate.rds > /anvil/scratch/x-farhat/bufferRates/${name}nmt81clr3$letters 2> /anvil/scratch/x-farhat/bufferRates/${name}nmt81clr3${letters}Err" sem --id $name$day -j 8 "Rscript runInferenceEqMAg20201122.R 4 ${name}nmt81mit1$letters TM/TM_nmt81mit1trans.rds 10000 /anvil/scratch/x-farhat/bufferRates/ F /anvil/scratch/x-farhat/bufferRates/${priorName}nmt81mit1${letters}_savestate.rds > /anvil/scratch/x-farhat/bufferRates/${name}nmt81mit1$letters 2> /anvil/scratch/x-farhat/bufferRates/${name}nmt81mit1${letters}Err" done sem --id $name$day --wait