file is too short for prediction?

[sapuizait]

Hi again

Sorry for the multiple threads but there are 2 different issues.
This is sth that prevents me from running the software.
I am trying to run rfplasmid on E.coli genomes (these are incomplete genomes coming from sequenced isolates - not MAGs). However, most of the time rfplasmid gives me the error that "genome IDXXXX is too short for prediction" and then it produces no output. So far I have gotten this error for several genomes and this is pretty weird as there is nothing wrong with the file it points out... Their size is decent, contigs are long and even if there was a problem, cant it continue with the other genomes and exclude the "problematic" one?
Could this be a bug?
The command I am running is rfplasmid --species Enterobacteriaceae --input input/ --jelly --threads 8 --out output/

thanks for your help in advance
P