From f47ab3e5089ba992d8f559b1e4dd7cd2ddae844b Mon Sep 17 00:00:00 2001 From: akikuno Date: Fri, 1 Nov 2024 10:13:18 +0900 Subject: [PATCH] Debug of env --- .github/workflows/e2e_stx2_deletion.yml | 5 ++++- docs/RELEASE.md | 2 ++ 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/.github/workflows/e2e_stx2_deletion.yml b/.github/workflows/e2e_stx2_deletion.yml index fa0b503..20d68ee 100644 --- a/.github/workflows/e2e_stx2_deletion.yml +++ b/.github/workflows/e2e_stx2_deletion.yml @@ -28,10 +28,13 @@ jobs: activate-environment: test-env channels: bioconda, conda-forge, defaults - - name: Create conda environment and install dependencies + - name: Create and activate conda environment run: | conda create -y -n env-dajin2 python=${{ matrix.python-version }} pip pytest conda activate env-dajin2 + + - name: Install DAJIN2 and dependencies + run: | pip install -e . # Install DAJIN2 in editable mode - name: Download example dataset diff --git a/docs/RELEASE.md b/docs/RELEASE.md index 7f7c71f..b2ef99a 100644 --- a/docs/RELEASE.md +++ b/docs/RELEASE.md @@ -51,6 +51,8 @@ + Move the FASTX IO processing to `utils.io`. Issue: #66 [[Commit Detail](https://github.com/akikuno/DAJIN2/commit/cca3db0b13ac53e082e2272f7ee7f593f905bd25)] ++ Add E2E tests in Github Actions. [[Commit Detail](https://github.com/akikuno/DAJIN2/commit/8fb93621ae7b9c4e867a68e9160c3295bfb0f872)] + ## ⛔️ Deprecated