First draft of making an afni_proc.py BIDS-App with "simple" afni_proc.py processing (for single echo FMRI at the moment)
To run (see details in program help file):
Execute the scripts/run_ap_simple_bidsapp script with 2 args:
DIR_INPUT : BIDS-formatted input directory
DIR_OUTPUT : to-be-created output directory of processed sets
Example:
scripts/run_ap_simple_bidsapp bids_dataset afni_proc_dataset