NAMESPACE

# Generated by roxygen2: do not edit by hand

export(ScenicOptions)
export(add_cell_annotation)
export(calcRSS)
export(checkAnnots)
export(dbLoadingAttempt)
export(dbVersion)
export(dotHeatmap)
export(dotheatmap)
export(export2loom)
export(exportsForArboreto)
export(geneFiltering)
export(getDatabases)
export(getDatasetInfo)
export(getDbAnnotations)
export(getDbTfs)
export(getIntName)
export(getOutName)
export(getRegulonName)
export(getSettings)
export(getStatus)
export(getTF)
export(importAUCfromText)
export(importArboreto)
export(importModulesGmt)
export(initializeScenic)
export(loadFile)
export(loadInt)
export(mergeOverlappingModules)
export(onlyNonDuplicatedExtended)
export(plotEmb_rgb)
export(plotRSS)
export(plotRSS_oneSet)
export(plotTsne_AUCellApp)
export(plotTsne_AUCellHtml)
export(plotTsne_compareSettings)
export(regulonSelections)
export(regulon_plotExpression)
export(regulonsToGeneLists)
export(runCorrelation)
export(runGenie3)
export(runSCENIC_1_coexNetwork2modules)
export(runSCENIC_2_createRegulons)
export(runSCENIC_3_scoreCells)
export(runSCENIC_4_aucell_binarize)
export(selectRegulons)
export(topPerTf)
export(tsneAUC)
export(tsneFileName)
export(viewMotifs)
export(viewTable)
exportMethods(getDatabases)
exportMethods(getDatasetInfo)
exportMethods(getIntName)
exportMethods(getOutName)
exportMethods(getSettings)
exportMethods(getStatus)
exportMethods(loadFile)
exportMethods(loadInt)
import(AUCell)
import(data.table)
importFrom(R.utils,capitalize)
importFrom(ggrepel,geom_label_repel)