python_actions.yml

name: Python CI actions

on:
  push:
    branches:
      - master
  pull_request:
env:
  PGDATABASE: citation_capture_pipeline_test
  PGPASSWORD: postgres
  PGUSER: postgres
  PGHOST: localhost
  PGPORT: 5432

jobs:
  build:

    runs-on: ubuntu-latest

    services:
      postgres:
        image: postgres:14.0
        env:
          POSTGRES_DB: citation_capture_pipeline_test
          POSTGRES_PASSWORD: postgres
          POSTGRES_USER: postgres
          POSTGRES_HOST: localhost
          POSTGRES_PORT: 5432

        ports:
          - 5432:5432
        # Set health checks to wait until postgres has started
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

    steps:
    - uses: actions/checkout@v2
    - uses: actions/setup-python@v2
      with:
        python-version: 3.8

    - name: Install dependencies
      run: |
        pip install pip==24.0
        pip install -U -r requirements.txt
        pip install -U -r dev-requirements.txt

    - name: Test with pytest
      run: |
        py.test

    - uses: actions/upload-artifact@v4
      with:
        include-hidden-files: true
        name: coverage-citationcapture
        path: .coverage


  coveralls:

    needs: build
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2
    - uses: actions/setup-python@v2
      with:
        python-version: 3.8

    - name: Install dependencies
      run: |
        python -m pip install --upgrade wheel setuptools pip
        pip install coverage==5.2.1
        pip install coveralls==2.2.0
    - uses: actions/download-artifact@master
      with:
        name: coverage-citationcapture

    - name: Coveralls
      run: coveralls
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}