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Coinertia Analysis#> Alternative hypothesis: greater #> #> Std.Obs Expectation Variance -#> 7.976709221 0.085068567 0.002099421 +#> 7.830388505 0.085927586 0.002168386

In this case, the link between the composition of species assemblages and environmental conditions is highly significant.

Coinertia Analysis maximises covariances and thus can handle tables @@ -471,7 +471,7 @@

Coinertia Analysis#> Alternative hypothesis: greater #> #> Std.Obs Expectation Variance -#> 11.006731521 0.106336706 0.002318494 +#> 11.536349363 0.107414725 0.002101926

Analysis on instrumental variables @@ -640,7 +640,7 @@

Redundancy Analysis#> Alternative hypothesis: greater #> #> Std.Obs Expectation Variance -#> 4.321348736 0.375874015 0.007925812 +#> 4.949898690 0.372996568 0.006131435

Lastly, the summary function also returns information on the eigenvalues and their decomposition. The initial analysis (pca.fish) seeks linear combination of the variables with diff --git a/articles/ChapBetGr.html b/articles/ChapBetGr.html index 231598f4..33abcff0 100644 --- a/articles/ChapBetGr.html +++ b/articles/ChapBetGr.html @@ -457,7 +457,7 @@

Between-site analysis#> Alternative hypothesis: greater #> #> Std.Obs Expectation Variance -#> 3.469483465 0.219855853 0.004073695 +#> 3.536585195 0.218460129 0.003970154

The observed value of the criterion is equal to 0.4413, which means that 44% of the total inertia comes from the differences between sites. The simulated p-value is equal to 0.004, which means that the @@ -659,8 +659,8 @@

Discriminant Analysis#> Simulated p-value: 0.001 #> Alternative hypothesis: greater #> -#> Std.Obs Expectation Variance -#> 5.607958728 0.130452241 0.000494632 +#> Std.Obs Expectation Variance +#> 5.7261170142 0.1291441709 0.0004844328

The observed value of the criterion is equal to 0.2552, which means that 26% of the total inertia comes from the differences between seasons. The simulated p-value is equal to 0.001, which means diff --git a/articles/ChapBetGr_files/figure-html/unnamed-chunk-15-1.png b/articles/ChapBetGr_files/figure-html/unnamed-chunk-15-1.png index 4017198a..6805d81a 100644 Binary files a/articles/ChapBetGr_files/figure-html/unnamed-chunk-15-1.png and b/articles/ChapBetGr_files/figure-html/unnamed-chunk-15-1.png differ diff --git a/articles/ChapBetGr_files/figure-html/unnamed-chunk-26-1.png b/articles/ChapBetGr_files/figure-html/unnamed-chunk-26-1.png index ba182d80..8062d786 100644 Binary files a/articles/ChapBetGr_files/figure-html/unnamed-chunk-26-1.png and b/articles/ChapBetGr_files/figure-html/unnamed-chunk-26-1.png differ diff --git a/articles/ChapEnvVarStruct_files/figure-html/unnamed-chunk-12-1.png b/articles/ChapEnvVarStruct_files/figure-html/unnamed-chunk-12-1.png index 35b3df0e..9b672b7c 100644 Binary files a/articles/ChapEnvVarStruct_files/figure-html/unnamed-chunk-12-1.png and b/articles/ChapEnvVarStruct_files/figure-html/unnamed-chunk-12-1.png differ diff --git a/articles/ChapEnvVarStruct_files/figure-html/unnamed-chunk-21-1.png b/articles/ChapEnvVarStruct_files/figure-html/unnamed-chunk-21-1.png index eb9c8abc..ba2b6c5d 100644 Binary files a/articles/ChapEnvVarStruct_files/figure-html/unnamed-chunk-21-1.png and b/articles/ChapEnvVarStruct_files/figure-html/unnamed-chunk-21-1.png differ diff --git a/articles/ChapKtables_files/figure-html/unnamed-chunk-15-1.png b/articles/ChapKtables_files/figure-html/unnamed-chunk-15-1.png index 70205af6..68d0668b 100644 Binary files a/articles/ChapKtables_files/figure-html/unnamed-chunk-15-1.png and b/articles/ChapKtables_files/figure-html/unnamed-chunk-15-1.png differ diff --git a/articles/ChapKtables_files/figure-html/unnamed-chunk-20-1.png b/articles/ChapKtables_files/figure-html/unnamed-chunk-20-1.png index 33ec9953..349354e0 100644 Binary files a/articles/ChapKtables_files/figure-html/unnamed-chunk-20-1.png and b/articles/ChapKtables_files/figure-html/unnamed-chunk-20-1.png differ diff --git a/articles/ChapKtables_files/figure-html/unnamed-chunk-9-1.png b/articles/ChapKtables_files/figure-html/unnamed-chunk-9-1.png index 4c0fe108..a8a3807b 100644 Binary files a/articles/ChapKtables_files/figure-html/unnamed-chunk-9-1.png and b/articles/ChapKtables_files/figure-html/unnamed-chunk-9-1.png differ diff --git a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-17-1.png b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-17-1.png index c4f03135..d6739ca0 100644 Binary files a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-17-1.png and b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-17-1.png differ diff --git a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-20-1.png b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-20-1.png index f6c2a252..d85827de 100644 Binary files a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-20-1.png and b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-20-1.png differ diff --git a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-22-1.png b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-22-1.png index cc02a458..67d06822 100644 Binary files a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-22-1.png and b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-22-1.png differ diff --git a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-23-1.png b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-23-1.png index 7dce2c9e..855f3276 100644 Binary files a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-23-1.png and b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-23-1.png differ diff --git a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-25-1.png b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-25-1.png index 5903d3d5..3f3e9f1d 100644 Binary files a/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-25-1.png and b/articles/ChapSpeciesStruct_files/figure-html/unnamed-chunk-25-1.png differ diff --git a/pkgdown.yml b/pkgdown.yml index a9028ef7..6b5b0af7 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -14,5 +14,5 @@ articles: papers: papers.html related: related.html faq: faq.html -last_built: 2023-11-06T14:23Z +last_built: 2023-11-16T15:41Z diff --git a/reference/RV.randtest-1.png b/reference/RV.randtest-1.png index 72610943..1858f38b 100644 Binary files a/reference/RV.randtest-1.png and b/reference/RV.randtest-1.png differ diff --git a/reference/RV.randtest.html b/reference/RV.randtest.html index 1334bb5b..8ddc4ab5 100644 --- a/reference/RV.randtest.html +++ b/reference/RV.randtest.html @@ -137,8 +137,8 @@

Examples#> Simulated p-value: 0.01 #> Alternative hypothesis: greater #> -#> Std.Obs Expectation Variance -#> 7.049300580 0.084331420 0.002699013 +#> Std.Obs Expectation Variance +#> 10.094484207 0.085766796 0.001305924 plot(rv1)

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Examples#> Simulated p-value: 0.01 #> Alternative hypothesis: greater #> -#> Std.Obs Expectation Variance -#> 8.20564564 0.07874425 0.00205316 +#> Std.Obs Expectation Variance +#> 10.061852300 0.081836655 0.001342883 plot(rv1) diff --git a/reference/RVintra.randtest-1.png b/reference/RVintra.randtest-1.png index 76138d26..a5eff4ae 100644 Binary files a/reference/RVintra.randtest-1.png and b/reference/RVintra.randtest-1.png differ diff --git a/reference/RVintra.randtest.html b/reference/RVintra.randtest.html index 247cc0f1..bed4bfcd 100644 --- a/reference/RVintra.randtest.html +++ b/reference/RVintra.randtest.html @@ -145,7 +145,7 @@

Examples#> Alternative hypothesis: greater #> #> Std.Obs Expectation Variance -#> 4.525578853 0.223279626 0.003308156 +#> 4.552475340 0.223137927 0.003272742 plot(rv1) diff --git a/reference/Rplot002.png b/reference/Rplot002.png index 92af3d08..f66c30a6 100644 Binary files a/reference/Rplot002.png and b/reference/Rplot002.png differ diff --git a/reference/Rplot003.png b/reference/Rplot003.png index 32ed9201..bcb0ca16 100644 Binary files a/reference/Rplot003.png and b/reference/Rplot003.png differ diff --git a/reference/Rplot004.png b/reference/Rplot004.png index feda301a..7f4ed8d0 100644 Binary files a/reference/Rplot004.png and b/reference/Rplot004.png differ diff --git a/reference/Rplot006.png b/reference/Rplot006.png index 040c28d7..d9d581ae 100644 Binary files a/reference/Rplot006.png and b/reference/Rplot006.png differ diff --git a/reference/Rplot007.png b/reference/Rplot007.png index 401fb719..03b53542 100644 Binary files a/reference/Rplot007.png and b/reference/Rplot007.png differ diff --git a/reference/Rplot008.png b/reference/Rplot008.png index e3fa99f8..2ee9b3d4 100644 Binary files a/reference/Rplot008.png and b/reference/Rplot008.png differ diff --git a/reference/Rplot009.png b/reference/Rplot009.png index 64d5593b..3ddcb850 100644 Binary files a/reference/Rplot009.png and b/reference/Rplot009.png differ diff --git a/reference/Rplot011.png b/reference/Rplot011.png index 0c3cfa11..533063cf 100644 Binary files a/reference/Rplot011.png and b/reference/Rplot011.png differ diff --git a/reference/Rplot012.png b/reference/Rplot012.png index 993ea6df..e07b16db 100644 Binary files a/reference/Rplot012.png and b/reference/Rplot012.png differ diff --git a/reference/Rplot013.png b/reference/Rplot013.png index 0e334aeb..1de49557 100644 Binary files a/reference/Rplot013.png and b/reference/Rplot013.png differ diff --git a/reference/Rplot014.png b/reference/Rplot014.png index ed006a0c..a8c5af49 100644 Binary files a/reference/Rplot014.png and b/reference/Rplot014.png differ diff --git a/reference/Rplot015.png b/reference/Rplot015.png index c95237e6..7bfd04c0 100644 Binary files a/reference/Rplot015.png and b/reference/Rplot015.png differ diff --git a/reference/add.scatter-1.png b/reference/add.scatter-1.png index 00eab1f7..efe34ce1 100644 Binary files a/reference/add.scatter-1.png and b/reference/add.scatter-1.png differ diff --git a/reference/as.taxo-1.png b/reference/as.taxo-1.png index 07781307..925e2c4f 100644 Binary files a/reference/as.taxo-1.png and b/reference/as.taxo-1.png differ diff --git a/reference/butterfly-1.png b/reference/butterfly-1.png index 98c86a7b..cf201f71 100644 Binary files a/reference/butterfly-1.png and b/reference/butterfly-1.png differ diff --git a/reference/combine.4thcorner.html b/reference/combine.4thcorner.html index 36b1d693..f7790192 100644 --- a/reference/combine.4thcorner.html +++ b/reference/combine.4thcorner.html @@ -190,55 +190,104 @@

Examples#> Permutation method Comb. 2 and 4 ( 99 permutations) #> #> Adjustment method for multiple comparisons: holm -#> Test Stat Obs Std.Obs Alter Pvalue Pvalue.adj -#> 1 Aspect / Height r -0.045735104 -1.04629341 two-sided 0.28 1.00 -#> 2 Slope / Height r 0.094917344 2.01387112 two-sided 0.05 1.00 -#> 3 Form / Height F 15.219879474 4.56085753 greater 0.01 0.48 -#> 4 PhysD / Height r 0.113164322 2.23939158 two-sided 0.03 0.93 -#> 5 ZoogD / Height F 15.227717714 1.91154006 greater 0.06 1.00 -#> 6 Snow / Height r -0.271739531 -6.48163987 two-sided 0.01 0.48 -#> 7 Aspect / Spread r -0.044170141 -1.53064344 two-sided 0.16 1.00 -#> 8 Slope / Spread r -0.017325425 -0.49136380 two-sided 0.60 1.00 -#> 9 Form / Spread F 5.548173196 0.17816115 greater 0.34 1.00 -#> 10 PhysD / Spread r -0.051680330 -1.76773863 two-sided 0.10 1.00 -#> 11 ZoogD / Spread F 0.120114487 -0.87076543 greater 0.93 1.00 -#> 12 Snow / Spread r 0.065634673 0.75662073 two-sided 0.49 1.00 -#> 13 Aspect / Angle r -0.090837201 -1.80021142 two-sided 0.08 1.00 -#> 14 Slope / Angle r 0.100281966 2.11657953 two-sided 0.04 1.00 -#> 15 Form / Angle F 30.664664234 6.90126081 greater 0.01 0.48 -#> 16 PhysD / Angle r 0.221380084 4.29804091 two-sided 0.01 0.48 -#> 17 ZoogD / Angle F 28.051040522 3.08648132 greater 0.02 0.68 -#> 18 Snow / Angle r -0.269613756 -2.62042840 two-sided 0.02 0.68 -#> 19 Aspect / Area r 0.031237858 0.62167870 two-sided 0.51 1.00 -#> 20 Slope / Area r -0.003864605 -0.08544032 two-sided 0.93 1.00 -#> 21 Form / Area F 13.609309880 1.59817254 greater 0.11 1.00 -#> 22 PhysD / Area r -0.134371361 -2.03987081 two-sided 0.02 0.68 -#> 23 ZoogD / Area F 49.672266332 14.98258862 greater 0.01 0.48 -#> 24 Snow / Area r -0.024574466 -0.54204623 two-sided 0.60 1.00 -#> 25 Aspect / Thick r -0.058466142 -1.76068673 two-sided 0.09 1.00 -#> 26 Slope / Thick r 0.074151819 1.55985819 two-sided 0.14 1.00 -#> 27 Form / Thick F 14.204346501 2.25493920 greater 0.04 1.00 -#> 28 PhysD / Thick r 0.143161734 3.96870960 two-sided 0.01 0.48 -#> 29 ZoogD / Thick F 2.825887968 0.50218075 greater 0.21 1.00 -#> 30 Snow / Thick r -0.154660144 -1.51938176 two-sided 0.15 1.00 -#> 31 Aspect / SLA r -0.007694551 -0.04759934 two-sided 0.96 1.00 -#> 32 Slope / SLA r -0.235864886 -3.72005977 two-sided 0.01 0.48 -#> 33 Form / SLA F 100.787472071 20.29119899 greater 0.01 0.48 -#> 34 PhysD / SLA r -0.275524984 -4.25124042 two-sided 0.01 0.48 -#> 35 ZoogD / SLA F 0.984301951 -0.81594075 greater 0.84 1.00 -#> 36 Snow / SLA r 0.481181824 8.52578203 two-sided 0.01 0.48 -#> 37 Aspect / N_mass r -0.061575524 -0.93135372 two-sided 0.32 1.00 -#> 38 Slope / N_mass r -0.201308154 -3.43213812 two-sided 0.01 0.48 -#> 39 Form / N_mass F 70.042280400 17.31801667 greater 0.01 0.48 -#> 40 PhysD / N_mass r -0.212434381 -3.70012781 two-sided 0.01 0.48 -#> 41 ZoogD / N_mass F 10.300092724 1.04604082 greater 0.15 1.00 -#> 42 Snow / N_mass r 0.429271163 8.35365681 two-sided 0.01 0.48 -#> 43 Aspect / Seed r 0.011598435 0.45828129 two-sided 0.61 1.00 -#> 44 Slope / Seed r 0.077073974 1.63119822 two-sided 0.12 1.00 -#> 45 Form / Seed F 5.561841954 0.22914039 greater 0.28 1.00 -#> 46 PhysD / Seed r 0.078156305 1.31631498 two-sided 0.19 1.00 -#> 47 ZoogD / Seed F 3.369068338 2.26041303 greater 0.07 1.00 -#> 48 Snow / Seed r -0.177640721 -1.80586849 two-sided 0.05 1.00 +#> Test Stat Obs Std.Obs Alter Pvalue Pvalue.adj +#> 1 Aspect / Height r -0.045735104 -1.044914548 two-sided 0.30 1.00 +#> 2 Slope / Height r 0.094917344 2.025112027 two-sided 0.04 1.00 +#> 3 Form / Height F 15.219879474 2.819662301 greater 0.02 0.66 +#> 4 PhysD / Height r 0.113164322 1.760630501 two-sided 0.07 1.00 +#> 5 ZoogD / Height F 15.227717714 1.120157256 greater 0.10 1.00 +#> 6 Snow / Height r -0.271739531 -6.482396917 two-sided 0.01 0.48 +#> 7 Aspect / Spread r -0.044170141 -1.640409985 two-sided 0.08 1.00 +#> 8 Slope / Spread r -0.017325425 -0.543507500 two-sided 0.56 1.00 +#> 9 Form / Spread F 5.548173196 0.177206246 greater 0.27 1.00 +#> 10 PhysD / Spread r -0.051680330 -0.952712793 two-sided 0.32 1.00 +#> 11 ZoogD / Spread F 0.120114487 -1.044385830 greater 0.96 1.00 +#> 12 Snow / Spread r 0.065634673 0.670049978 two-sided 0.50 1.00 +#> 13 Aspect / Angle r -0.090837201 -2.512360137 two-sided 0.02 0.66 +#> 14 Slope / Angle r 0.100281966 2.161096390 two-sided 0.03 0.87 +#> 15 Form / Angle F 30.664664234 7.872865608 greater 0.01 0.48 +#> 16 PhysD / Angle r 0.221380084 4.776266860 two-sided 0.01 0.48 +#> 17 ZoogD / Angle F 28.051040522 4.694534778 greater 0.01 0.48 +#> 18 Snow / Angle r -0.269613756 -4.945992995 two-sided 0.01 0.48 +#> 19 Aspect / Area r 0.031237858 0.968069670 two-sided 0.31 1.00 +#> 20 Slope / Area r -0.003864605 0.001119365 two-sided 1.00 1.00 +#> 21 Form / Area F 13.609309880 3.191642972 greater 0.03 0.87 +#> 22 PhysD / Area r -0.134371361 -2.510931684 two-sided 0.02 0.66 +#> 23 ZoogD / Area F 49.672266332 12.847899959 greater 0.01 0.48 +#> 24 Snow / Area r -0.024574466 -0.807108256 two-sided 0.44 1.00 +#> 25 Aspect / Thick r -0.058466142 -1.772753933 two-sided 0.08 1.00 +#> 26 Slope / Thick r 0.074151819 1.438990250 two-sided 0.15 1.00 +#> 27 Form / Thick F 14.204346501 2.866008010 greater 0.02 0.66 +#> 28 PhysD / Thick r 0.143161734 4.378046011 two-sided 0.01 0.48 +#> 29 ZoogD / Thick F 2.825887968 0.261789721 greater 0.29 1.00 +#> 30 Snow / Thick r -0.154660144 -1.433034148 two-sided 0.15 1.00 +#> 31 Aspect / SLA r -0.007694551 -0.096742176 two-sided 0.89 1.00 +#> 32 Slope / SLA r -0.235864886 -4.004572002 two-sided 0.01 0.48 +#> 33 Form / SLA F 100.787472071 18.904562356 greater 0.01 0.48 +#> 34 PhysD / SLA r -0.275524984 -4.639340052 two-sided 0.01 0.48 +#> 35 ZoogD / SLA F 0.984301951 -0.976374865 greater 0.92 1.00 +#> 36 Snow / SLA r 0.481181824 7.339801065 two-sided 0.01 0.48 +#> 37 Aspect / N_mass r -0.061575524 -1.127047222 two-sided 0.31 1.00 +#> 38 Slope / N_mass r -0.201308154 -3.622810034 two-sided 0.01 0.48 +#> 39 Form / N_mass F 70.042280400 13.538960681 greater 0.01 0.48 +#> 40 PhysD / N_mass r -0.212434381 -3.965807753 two-sided 0.01 0.48 +#> 41 ZoogD / N_mass F 10.300092724 0.497432536 greater 0.22 1.00 +#> 42 Snow / N_mass r 0.429271163 7.164935686 two-sided 0.01 0.48 +#> 43 Aspect / Seed r 0.011598435 0.568738075 two-sided 0.59 1.00 +#> 44 Slope / Seed r 0.077073974 1.774526937 two-sided 0.08 1.00 +#> 45 Form / Seed F 5.561841954 0.320875099 greater 0.29 1.00 +#> 46 PhysD / Seed r 0.078156305 1.451480496 two-sided 0.16 1.00 +#> 47 ZoogD / Seed F 3.369068338 1.146455791 greater 0.10 1.00 +#> 48 Snow / Seed r -0.177640721 -1.943785194 two-sided 0.06 1.00 +#> +#> 1 +#> 2 +#> 3 +#> 4 +#> 5 +#> 6 +#> 7 +#> 8 +#> 9 +#> 10 +#> 11 +#> 12 +#> 13 +#> 14 +#> 15 +#> 16 +#> 17 +#> 18 +#> 19 +#> 20 +#> 21 +#> 22 +#> 23 +#> 24 +#> 25 +#> 26 +#> 27 +#> 28 +#> 29 +#> 30 +#> 31 +#> 32 +#> 33 +#> 34 +#> 35 +#> 36 +#> 37 +#> 38 +#> 39 +#> 40 +#> 41 +#> 42 +#> 43 +#> 44 +#> 45 +#> 46 +#> 47 +#> 48 #> #> --- #> Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 diff --git a/reference/corkdist-1.png b/reference/corkdist-1.png index b083a67e..4e6ecc18 100644 Binary files a/reference/corkdist-1.png and b/reference/corkdist-1.png differ diff --git a/reference/corkdist-3.png b/reference/corkdist-3.png index dabefb6d..e4a7b784 100644 Binary files a/reference/corkdist-3.png and b/reference/corkdist-3.png differ diff --git a/reference/corkdist-4.png b/reference/corkdist-4.png index b647741b..cf7fd8a2 100644 Binary files a/reference/corkdist-4.png and b/reference/corkdist-4.png differ diff --git a/reference/corkdist-6.png b/reference/corkdist-6.png index b655f10a..bfe93c68 100644 Binary files a/reference/corkdist-6.png and b/reference/corkdist-6.png differ diff --git a/reference/corkdist-7.png b/reference/corkdist-7.png index 4c6aa1c2..52f06d7a 100644 Binary files a/reference/corkdist-7.png and b/reference/corkdist-7.png differ diff --git a/reference/corkdist.html b/reference/corkdist.html index 1877d256..08ef9d04 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Examples#> Observation: 0.5098684 #> #> Based on 999 replicates -#> Simulated p-value: 0.002 +#> Simulated p-value: 0.003 #> Alternative hypothesis: greater #> -#> Std.Obs Expectation Variance -#> 3.162990735 0.002022876 0.025779082 +#> Std.Obs Expectation Variance +#> 3.185971924 -0.003351702 0.025949169 #> #> ant-geo #> Monte-Carlo test @@ -203,7 +203,7 @@

Examples#> Alternative hypothesis: greater #> #> Std.Obs Expectation Variance -#> 5.1868593005 -0.0003891968 0.0264269219 +#> 5.0493830473 -0.0008449574 0.0279156819 #> #> ant-gen #> Monte-Carlo test @@ -212,20 +212,20 @@

Examples#> Observation: 0.2995506 #> #> Based on 999 replicates -#> Simulated p-value: 0.055 +#> Simulated p-value: 0.05 #> Alternative hypothesis: greater #> -#> Std.Obs Expectation Variance -#> 1.828921299 -0.009777211 0.028605384 +#> Std.Obs Expectation Variance +#> 1.735687968 0.008551923 0.028108560 #> list of 3 'randtest' objects summary(m1) #> Mantel's tests for 'kdist' object #> Call: mantelkdist(kd = kdist(yanomama), nrepet = 999) #> Simulated p-values: -#> 1 2 3 -#> geo - - - -#> gen 0.002 - - -#> ant 0.001 0.055 - +#> 1 2 3 +#> geo - - - +#> gen 0.003 - - +#> ant 0.001 0.05 - plot(m1) diff --git a/reference/costatis.randtest.html b/reference/costatis.randtest.html index 079f8d12..b033004c 100644 --- a/reference/costatis.randtest.html +++ b/reference/costatis.randtest.html @@ -141,11 +141,11 @@

Examples#> Observation: 0.8204725 #> #> Based on 999 replicates -#> Simulated p-value: 0.007 +#> Simulated p-value: 0.003 #> Alternative hypothesis: greater #> #> Std.Obs Expectation Variance -#> 2.6398390 0.5032631 0.0144390 +#> 2.67380926 0.49901080 0.01445431