some questions of the output file

[ZYongQi]

hello,this is ZYongQi !
Follow your suggestion , I have tried CNVpytor instead of CNVnator . And the output file is successfully obtained.
Part of the document is as follows:
deletion NC_048218.1:1-59000000 59000000 0.9875 0.000000e+00....
deletion NC_048218.1:26001-43000 17000 0.0403 0.000000e+00....
deletion NC_048218.1:63001-87000 24000 0.0682 0.000000e+00....
... .... .....
duplication NC_048218.1:43894001-43898000 4000 1.6724 2.559436e-04
... .... ....
deletion NC_048219.1:1-199810000 199810000 0.9863 0.000000e+00....
deletion NC_048219.1:17001-20000 3000 0.0765 5.197318e-04....
duplication NC_048219.1:347001-355000 8000 1.4984 6.103992e-10

the first question is : why it prints 'deletion' in the first line while the chromsome range prints 1-59000000 ? The fact is there is duplication in the next few line.
the second question is : after obtaining the result file and filtering it, how do you usually annotate it?
Looking forward to your reply！

[suvakov]

1. Which caller are you using here?
2. For annotating calls, see the following instructions.

[ZYongQi]

1. Which caller are you using here?
2. For annotating calls, see the following instructions.

This is ZYongQi!
Thank you fou your suggestion,I've sovled the problems I met before.When I got the data, I found that there were some outliers, which is noise,I mean.So I tried to filter the output calls from CNVpytor.But there is something wrong. I finally found that I have no mask file of the genome. So I wonder where did you get the mask file --mouse.strict_mask.whole_genome.fasta.gz ?

My reference is your commend on GitHub：https://github.com/abyzovlab/CNVpytor/blob/master/examples/AddReferenceGenome.md