- Added the ability to export and import StrainHub networks as RDS files.
- Updated/removed some figure export abilities and prepared app for Docker containerization.
- Replaced underlying StrainHub functionality to reference R package version of StrainHub. (Thanks, Adesolji Ademiluyi!)
Second public release!
- Added Logo to Homepage
- Added Tip Label to Metadata Validation
- Added Homepage
- Added Posterior Probability Threshold for BEAST
- Added Google Analytics integration
- Added geodata editor for BEAST trees
- Hide metadata editor and geodata editor if files haven't been uploaded
- Add bootstrap value slider for NJ tree generation
- Add mapping options (basemap options, arrow styles, etc.)
- Enhance download capabilities for map, network, and metrics table
- Add error message is user forgets to specify NJ tree root
- Changed mapping to be Swoopy and Leaflet-based
- Bug fixes
- Add better error messaging
- Add globe map for BEAST and NJ inputs.
- Fix NJ tree generation
- Add geodata editor
- Increase flexibility of location column name for geodata
- Change centrality metric selection to dropdown (from radio buttons)
- Add better error messaging
- Change network title font to Lato
- Fix NJ Tree Creation
- Add globe visual for Parsimonious tree input
- Faster performance (as files are only read in once)
- Add metadata Editor
- Ability to export networks as HTML or PNG
- Ability to turn off directionality (arrows) on edges
beta
First public release!
- Tree Files Accepted:
- Parsimony
- BEAST Phylogeography
- Visualization Capabilities:
- Network Plot
- Plotly-based Dendrogram
- Metrics Output
- Neighbor-joining tree generation
- Improved tree visualization
- Improved plot output
- ...and more!