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galaxy-web.yaml
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galaxy-web.yaml
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apiVersion: v1
kind: Pod
metadata:
name: galaxy
labels:
app: galaxy-web
spec:
volumes:
- name: shared-data
hostPath:
path: /export
securityContext:
fsGroup: 0
supplementalGroups: [1450,4096,0]
runAsUser:
nodeSelector:
type: store
containers:
- name: galaxy-rabbitmq
image: rabbitmq:alpine
volumeMounts:
- name: shared-data
mountPath: /var/lib/rabbitmq
env:
- name: RABBITMQ_DEFAULT_USER
value: galaxy
- name: RABBITMQ_DEFAULT_PASS
value: vaiJa3ieghai2ief0jao
- name: RABBITMQ_DEFAULT_VHOST
value: galaxy
- name: galaxy
image: abhikghosh41/galaxyansals-web
volumeMounts:
- name: shared-data
mountPath: /export/
env:
- name: NONUSE
value: proftpd,postgres,slurmd,slurmctld
- name: GALAXY_DEFAULT_ADMIN_USER
value: [email protected]
- name: GALAXY_DEFAULT_ADMIN_PASSWORD
value: admin
- name: GALAXY_DEFAULT_ADMIN_KEY
value: admin
- name: GALAXY_HANDLER_NUMPROCS
value: "2"
- name: UWSGI_PROCESSES
value: "4"
- name: GALAXY_CONFIG_ALLOW_USER_DATASET_PURGE
value: "True"
- name: GALAXY_CONFIG_ALLOW_LIBRARY_PATH_PASTE
value: "True"
- name: GALAXY_CONFIG_ENABLE_USER_DELETION
value: "True"
- name: GALAXY_CONFIG_ENABLE_BETA_WORKFLOW_MODULES
value: "True"
- name: GALAXY_CONFIG_DATABASE_CONNECTION
value: postgresql://galaxy:chaopagoosaequuashie@galaxy-postgres/galaxy?client_encoding=utf8
# Configurate admin and master api key. Can be overridden in galaxy.ini
- name: GALAXY_CONFIG_ADMIN_USERS
value: [email protected]
- name: GALAXY_CONFIG_MASTER_API_KEY
value: HSNiugRFvgT574F43jZ7N9F3
- name: GALAXY_CONFIG_AMQP_INTERNAL_CONNECTION
value: amqp://galaxy:vaiJa3ieghai2ief0jao@galaxy/galaxy
# Condor
- name: GALAXY_DESTINATIONS_DEFAULT
value: condor_cluster
- name: ENABLE_CONDOR
value: "True"
- name: CONDOR_HOST
value: "galaxy-htcondor"
- name: GALAXY_CONDOR_UNIVERSE
value: vanilla
- name: GALAXY_DOCKER_ENABLED
value: "False"
- name: GALAXY_CONFIG_CLEANUP_JOB
value: onsuccess
- name: PRIVILEGED_CONDOR_CONTAINER
value: "True"
ports:
- hostPort: 8080
containerPort: 80
ports:
- hostPort: 8081
containerPort: 8080
ports:
- hostPort: 9001
containerPort: 9001
ports:
- containerPort: 9618
protocol: TCP
securityContext:
privileged: true
runAsUser: 0