diff --git a/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/query/Condition.java b/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/query/Condition.java
index 27fc822f30..2ac057a5b0 100644
--- a/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/query/Condition.java
+++ b/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/query/Condition.java
@@ -565,6 +565,10 @@ public Object value() {
             return this.value;
         }
 
+        public void setValue(Object value) {
+            this.value = value;
+        }
+
         public void serialKey(Object key) {
             this.serialKey = key;
         }
diff --git a/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/query/ConditionQuery.java b/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/query/ConditionQuery.java
index 8de686746d..73eaf3ea2e 100644
--- a/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/query/ConditionQuery.java
+++ b/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/query/ConditionQuery.java
@@ -537,6 +537,23 @@ public ConditionQuery copyAndResetUnshared() {
         return query;
     }
 
+    public Condition.Relation copyRelation(Object key) {
+        Condition.Relation copyRes = null;
+        for (int i = 0; i < this.conditions.size(); i++) {
+            Condition c = this.conditions.get(i);
+            if (c.isRelation()) {
+                Condition.Relation r = (Condition.Relation) c;
+                if (r.key().equals(key)) {
+                    copyRes = r.copy();
+                    this.conditions.set(i, copyRes);
+                    break;
+                }
+            }
+        }
+        E.checkArgument(copyRes != null, "Copying Condition.Relation failed. key:%s", key);
+        return copyRes;
+    }
+
     @Override
     public boolean test(HugeElement element) {
         if (!this.ids().isEmpty() && !super.test(element)) {
diff --git a/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/tx/GraphTransaction.java b/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/tx/GraphTransaction.java
index 4d1cb05977..03e4c5b6e4 100644
--- a/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/tx/GraphTransaction.java
+++ b/hugegraph-server/hugegraph-core/src/main/java/org/apache/hugegraph/backend/tx/GraphTransaction.java
@@ -1464,20 +1464,25 @@ private Query optimizeQuery(ConditionQuery query) {
                     VertexLabel vertexLabel = graph().vertexLabel(vertex.label());
                     return edgeLabel.linkWithLabel(vertexLabel.id(), dir.type());
                 }).collect(Collectors.toList());
-                vertexIdList.clear();
-                vertexIdList.addAll(filterVertexList);
-                if (CollectionUtils.isEmpty(vertexIdList)) {
+                if (CollectionUtils.isEmpty(filterVertexList)) {
                     // Return empty query to skip storage query
                     return new Query(query.resultType());
+                } else if (vertexIdList.size() != filterVertexList.size()) {
+                    // Modify on the copied relation to avoid affecting other query
+                    Condition.Relation relation = query.copyRelation(HugeKeys.OWNER_VERTEX);
+                    relation.setValue(filterVertexList);
                 }
             } else if (query.containsRelation(HugeKeys.OWNER_VERTEX, Condition.RelationType.EQ)) {
                 // For EQ query, just skip query if adjacent schema is unavailable.
                 Id vertexId = query.condition(HugeKeys.OWNER_VERTEX);
-                Vertex vertex = this.graph().vertex(vertexId);
-                VertexLabel vertexLabel = graph().vertexLabel(vertex.label());
-                if (!edgeLabel.linkWithLabel(vertexLabel.id(), dir.type())) {
-                    // Return empty query to skip storage query
-                    return new Query(query.resultType());
+                Iterator<Vertex> iter = this.queryVertices(vertexId);
+                Vertex vertex = QueryResults.one(iter);
+                if (vertex != null) {
+                    VertexLabel vertexLabel = graph().vertexLabel(vertex.label());
+                    if (!edgeLabel.linkWithLabel(vertexLabel.id(), dir.type())) {
+                        // Return empty query to skip storage query
+                        return new Query(query.resultType());
+                    }
                 }
             }